de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.datatypes

Class CellCntrMarkerShapeRegion

java.lang.Object

de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.datatypes.CellCntrMarkerShape

de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.datatypes.CellCntrMarkerShapeRegion

public class CellCntrMarkerShapeRegion
extends CellCntrMarkerShape

Class using a region as shape for markers.

Author:

Birgit Moeller

Field Summary

Fields

Modifier and Type	Field and Description
protected MTBRegion2D	mRegion Region object representing the shape of the marker.

Fields inherited from class de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.datatypes.CellCntrMarkerShape

avgIntensity, mBorder

Constructor Summary

Constructors

Modifier	Constructor and Description
private	CellCntrMarkerShapeRegion() Default constructor, it's protected to avoid constructing objects without region data.
	CellCntrMarkerShapeRegion(MTBRegion2D r) Default constructor with region object.
	CellCntrMarkerShapeRegion(MTBRegion2D r, MTBBorder2D b) Constructor with region and border object.

Method Summary

Modifier and Type	Method and Description
double	getArea() Get area of the shape.
MTBRegion2D	getRegion() Get region representing the shape.

Methods inherited from class de.unihalle.informatik.MiToBo.imageJ.plugins.cellCounter.datatypes.CellCntrMarkerShape

getAvgIntensity, getOutline, setAvgIntensity

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

mRegion

protected MTBRegion2D mRegion

Region object representing the shape of the marker.

Constructor Detail

CellCntrMarkerShapeRegion

private CellCntrMarkerShapeRegion()

Default constructor, it's protected to avoid constructing objects without region data.

CellCntrMarkerShapeRegion

public CellCntrMarkerShapeRegion(MTBRegion2D r)

Default constructor with region object.

Note that the border of the region is extracted in the course of object construction which might be time-consuming if done for many regions. In that case it might be a better idea to extract borders for all regions externally in one run and use the other constructor to which you can pass a border object directly.

Parameters:

r - Region object.

CellCntrMarkerShapeRegion

public CellCntrMarkerShapeRegion(MTBRegion2D r,
                                 MTBBorder2D b)

Constructor with region and border object.

Parameters:

r - Region object.

b - Border object.

Method Detail

getArea

public double getArea()

Description copied from class: CellCntrMarkerShape

Get area of the shape.

Specified by:

getArea in class CellCntrMarkerShape

Returns:

Size of shape area.

getRegion

public MTBRegion2D getRegion()

Get region representing the shape.

Returns:

Region object.