de.unihalle.informatik.MiToBo.apps.minirhizotron.segmentation

Class RhizoProjectLayerMetadataContainer

java.lang.Object

de.unihalle.informatik.MiToBo.apps.minirhizotron.segmentation.RhizoProjectLayerMetadataContainer

public class RhizoProjectLayerMetadataContainer
extends Object

Container class to exchange information about layers between rhizoTrak and MiToBo.

Author:

Birgit Moeller

Field Summary

Fields

Modifier and Type	Field and Description
protected MTBLineSegment2D	gravDirRefSegment Reference segment for gravitational direction providing a suggestion where to best position image marker.
protected double	gravitationalDirection Direction of gravitation in image of layer.
protected int	layerZ Z coordinate of layer used as unique ID.
protected MTBPolygon2D	roi Roi defined for given layer.

Constructor Summary

Constructors

Constructor and Description
RhizoProjectLayerMetadataContainer(int z) Default constructor.

Method Summary

Modifier and Type	Method and Description
double	getGravitationalDirection() Get gravitational direction.
MTBLineSegment2D	getGravitationalDirectionRefSegment() Get reference line segment for gravitational direction.
int	getLayerZ() Get Z coordinate of the layer.
MTBPolygon2D	getROI() Get region of interest.
void	setGravitationalDirection(double gd) Set gravitational direction.
void	setGravitationalDirectionRefSegment(MTBLineSegment2D ls) Set reference line segment for gravitational direction.
void	setROI(MTBPolygon2D r) Set region of interest.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

layerZ

protected int layerZ

Z coordinate of layer used as unique ID.

roi

protected MTBPolygon2D roi

Roi defined for given layer.

gravitationalDirection

protected double gravitationalDirection

Direction of gravitation in image of layer.

The direction is stored as angle in degrees with a range between 0 and 360. 0 means that the gravitational direction points to the right, 90 refers to a direction vertically to the bottom. I.e., the definition follows standard mathematical conventions in an upper left coordinate system with angles defined relative to the x-axis.

gravDirRefSegment

protected MTBLineSegment2D gravDirRefSegment

Reference segment for gravitational direction providing a suggestion where to best position image marker.

Constructor Detail

RhizoProjectLayerMetadataContainer

public RhizoProjectLayerMetadataContainer(int z)

Default constructor.

Parameters:

z - Z coordinate of layer.

Method Detail

getLayerZ

public int getLayerZ()

Get Z coordinate of the layer.

Returns:

Z coordinate.

setROI

public void setROI(MTBPolygon2D r)

Set region of interest.

Parameters:

r - Region of interest.

getROI

public MTBPolygon2D getROI()

Get region of interest.

Returns:

Region of interest as polygon.

setGravitationalDirection

public void setGravitationalDirection(double gd)

Set gravitational direction.

Parameters:

gd - Angle of gravitational direction.

getGravitationalDirection

public double getGravitationalDirection()

Get gravitational direction.

Returns:

Gravitational direction in degrees between 0 and 360.

setGravitationalDirectionRefSegment

public void setGravitationalDirectionRefSegment(MTBLineSegment2D ls)

Set reference line segment for gravitational direction.

Parameters:

ls - Reference line segment.

getGravitationalDirectionRefSegment

public MTBLineSegment2D getGravitationalDirectionRefSegment()

Get reference line segment for gravitational direction.

Returns:

Reference line segment.