de.unihalle.informatik.MiToBo.apps.minirhizotron.datatypes

Class MTBRootTree

java.lang.Object

de.unihalle.informatik.MiToBo.core.datatypes.MTBTree

de.unihalle.informatik.MiToBo.apps.minirhizotron.datatypes.MTBRootTree

All Implemented Interfaces:

Cloneable

@ALDDerivedClass
public class MTBRootTree
extends MTBTree
implements Cloneable

Tree datatype to represent plant roots.

All relevant data required to properly represent the nodes of a plant root tree is stored in the node data objects of type MTBRootTreeNodeData.

Author:

moeller

See Also:

MTBRootTreeNodeData

Field Summary

Fields inherited from class de.unihalle.informatik.MiToBo.core.datatypes.MTBTree

root

Constructor Summary

Constructors

Constructor and Description
MTBRootTree() Default constructor.
MTBRootTree(MTBPoint2DSet point2DSet) Constructor with given set of 2D points.
MTBRootTree(MTBRootTreeNodeData d) Constructor with given data.
MTBRootTree(MTBTreeNode n) Constructor with given root node.

Method Summary

Modifier and Type	Method and Description
MTBRootTree	clone()
private void	drawChilds(MTBImageRGB img, MTBTreeNode node) Recursively draws all subtrees outgoing from the given node to the image.
void	drawToImage(MTBImageRGB img) Draws the root tree to the given image.
boolean	reroot(MTBTreeNode node) Sets the given node as the new root.

Methods inherited from class de.unihalle.informatik.MiToBo.core.datatypes.MTBTree

cloneChild, getAllNodesDepthFirst, getRoot, printTree

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

MTBRootTree

public MTBRootTree()

Default constructor.

The tree is initialized with just a root node with empty node data.

MTBRootTree

public MTBRootTree(MTBRootTreeNodeData d)

Constructor with given data.

The tree is initialized with the given node data for the root node.

MTBRootTree

public MTBRootTree(MTBTreeNode n)

Constructor with given root node.

The tree is initialized with the given node as the root node.

MTBRootTree

public MTBRootTree(MTBPoint2DSet point2DSet)

Constructor with given set of 2D points.

Parameters:

point2DSet - 2D points that are assumed to be in order and represent a line.

Method Detail

reroot

public boolean reroot(MTBTreeNode node)

Sets the given node as the new root.

Parameters:

node - A node that is part of this tree.

Returns:

Success or failure.

clone

public MTBRootTree clone()

Overrides:

clone in class MTBTree

drawToImage

public void drawToImage(MTBImageRGB img)

Draws the root tree to the given image.

The colors of the segments are chosen according to the status:

• LIVING = green
• DEAD = red
• DECAYED = orange
• GAP = yellow
• CONNECTOR = magenta
• VIRTUAL = gray
• VIRTUAL_RSML = lightgreen
• UNDEFINED = blue
• all other = white

Currently diameter information is ignored and just the centerlines are plotted.

Parameters:

img - Image to which the tree is to be drawn.

drawChilds

private void drawChilds(MTBImageRGB img,
                        MTBTreeNode node)

Recursively draws all subtrees outgoing from the given node to the image.

Parameters:

img - Target image.

node - Source node.