CellCounter (mitobo-plugins 2.5 API)

java.lang.Object
- java.awt.Component
- - java.awt.Container
  - - java.awt.Window
    - - java.awt.Frame
      - javax.swing.JFrame
        
        mtb_cellcounter.CellCounter

All Implemented Interfaces:

de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeListener, de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventListener, ActionListener, ItemListener, ImageObserver, MenuContainer, Serializable, EventListener, Accessible, DocumentListener, RootPaneContainer, WindowConstants, loci.common.StatusListener, loci.common.StatusReporter
```
public class CellCounter
extends JFrame
implements ActionListener, ItemListener, DocumentListener, loci.common.StatusReporter, loci.common.StatusListener, de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeListener, de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventListener
```
Main class of (MiToBo's) cell counter plugin.

Author:

Kurt De Vos, Birgit Moeller

See Also:

Serialized Form

Nested Class Summary

Nested Classes
Modifier and Type	Class and Description
`protected class`	`CellCounter.CellCounterDetectOperatorConfigPanel` Panel to configure operators to be applied to image.
`private static class`	`CellCounter.GUIShower` Show the GUI threadsafe

Nested classes/interfaces inherited from class javax.swing.JFrame
JFrame.AccessibleJFrame

Nested classes/interfaces inherited from class java.awt.Frame
Frame.AccessibleAWTFrame

Nested classes/interfaces inherited from class java.awt.Window
Window.AccessibleAWTWindow, Window.Type

Nested classes/interfaces inherited from class java.awt.Container
Container.AccessibleAWTContainer

Nested classes/interfaces inherited from class java.awt.Component
Component.AccessibleAWTComponent, Component.BaselineResizeBehavior, Component.BltBufferStrategy, Component.FlipBufferStrategy

Field Summary

Fields
Modifier and Type	Field and Description
`private static String`	`ABOUT`
`protected ImageIcon`	`aboutIcon` MiToBo icon to be shown in about box.
`private static String`	`ADD`
`protected JButton`	`addButton`
`protected JRadioButton`	`ch1Button`
`protected JRadioButton`	`ch2Button`
`protected JRadioButton`	`ch3Button`
`protected JRadioButton`	`ch4Button`
`protected ButtonGroup`	`channelGrp`
`private ij.ImagePlus`	`counterImg`
`protected CellCntrMarkerVector`	`currentMarkerVector`
`private static Color[]`	`defaultColors` Default colors to be used for the first 8 markers.
`private static String`	`DELETE`
`protected JButton`	`deleteButton`
`private static String`	`DETECT`
`protected JButton`	`detectButton`
`protected MTBImage`	`detectImg` Copy of input image used for pre-segmentation of regions.
`protected boolean`	`detectMode` Avoids editing markers during pre-segmentation phase.
`protected int`	`detectZSlice` Z-coordinate of currently selected slice, starting with 1 (!).
`protected JPanel`	`dynButtonPanel`
`protected Vector<de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent>`	`dynColorChooserVector` Keeps track of the color choosers.
`protected JPanel`	`dynColorPanel`
`private GridLayout`	`dynGrid`
`protected JPanel`	`dynPanel`
`protected Vector<JRadioButton>`	`dynRadioVector` Keeps track of the radio buttons for type selection.
`protected JPanel`	`dynTxtPanel`
`protected JButton`	`exportButton`
`private static String`	`EXPORTIMG`
`protected JButton`	`exportimgButton`
`private static String`	`EXPORTMARKERS`
`private static String`	`FILTER`
`protected JButton`	`filterButton`
`protected CellCntrImageCanvas`	`ic` Reference to associated image window.
`private ij.ImagePlus`	`img`
`private static String`	`INITIALIZE`
`protected JButton`	`initializeButton`
`(package private) static CellCounter`	`instance`
`private boolean`	`isJava14`
`private boolean`	`keepOriginal`
`private static String`	`KEEPORIGINAL`
`protected JButton`	`loadButton`
`private static String`	`LOADMARKERS`
`protected Vector<loci.common.StatusListener>`	`m_statusListeners` Vector of installed `StatusListener` objects.
`protected JCheckBox`	`markersCheck`
`private CellCntrMarkerVector`	`markerVector`
`private static String`	`MEASURE`
`protected JButton`	`measureButton`
`protected JCheckBox`	`newCheck`
`protected JCheckBox`	`numbersCheck`
`(package private) MTBOperatorCollection<CellCounterDetectOperator>`	`opCollection` Collection of available detectors for pre-segmentation.
`protected CellCounter.CellCounterDetectOperatorConfigPanel`	`opConfPanel`
`static int`	`OPEN`
`HashMap<String,Integer>`	`opTypeIDs`
`protected CellCntrRegionFilterFrame`	`pFilter` Frame for filtering segmented regions in a user-friendly manner.
`protected JDialog`	`progressMessageWin` Corresponding configuration and control window.
`private static String`	`QUIT`
`protected ButtonGroup`	`radioGrp`
`private static String`	`REMOVE`
`protected JButton`	`removeButton`
`protected boolean`	`renderHighQuality` Flag to enable or disable high quality rendering.
`private static String`	`RESET`
`protected JButton`	`resetButton`
`private static String`	`RESETCOUNTER`
`private static String`	`RESULTS`
`protected JButton`	`resultsButton`
`static int`	`SAVE`
`private static String`	`SELECT`
`protected JButton`	`selectButton`
`protected JSeparator`	`separator`
`private static String`	`SHOWALL`
`protected JCheckBox`	`showAllCheck`
`protected JCheckBox`	`showBordersBox`
`private static String`	`SHOWMARKERS`
`private static String`	`SHOWNUMBERS`
`protected JSpinner`	`spChannelBoundaries`
`protected SpinnerNumberModel`	`spmChannelBoundaries`
`protected JPanel`	`statButtonPanel`
`private Vector<JTextField>`	`txtFieldVector` Keeps track of the text fields showing numbers of markers.
`protected Vector<CellCntrMarkerVector>`	`typeVector` Keeps track of the marker vectors.

Fields inherited from class javax.swing.JFrame
accessibleContext, EXIT_ON_CLOSE, rootPane, rootPaneCheckingEnabled

Fields inherited from class java.awt.Frame
CROSSHAIR_CURSOR, DEFAULT_CURSOR, E_RESIZE_CURSOR, HAND_CURSOR, ICONIFIED, MAXIMIZED_BOTH, MAXIMIZED_HORIZ, MAXIMIZED_VERT, MOVE_CURSOR, N_RESIZE_CURSOR, NE_RESIZE_CURSOR, NORMAL, NW_RESIZE_CURSOR, S_RESIZE_CURSOR, SE_RESIZE_CURSOR, SW_RESIZE_CURSOR, TEXT_CURSOR, W_RESIZE_CURSOR, WAIT_CURSOR

Fields inherited from class java.awt.Component
BOTTOM_ALIGNMENT, CENTER_ALIGNMENT, LEFT_ALIGNMENT, RIGHT_ALIGNMENT, TOP_ALIGNMENT

Fields inherited from interface javax.swing.WindowConstants
DISPOSE_ON_CLOSE, DO_NOTHING_ON_CLOSE, HIDE_ON_CLOSE

Fields inherited from interface java.awt.image.ImageObserver
ABORT, ALLBITS, ERROR, FRAMEBITS, HEIGHT, PROPERTIES, SOMEBITS, WIDTH

Constructor Summary

Constructors
Constructor and Description

CellCounter()

Constructors
Constructor and Description
`CellCounter()`

Method Summary

All Methods Static Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`void`	`actionPerformed(ActionEvent event)`
`private void`	`addMenuBar()` Adds a menu bar to the frame.
`void`	`addStatusListener(loci.common.StatusListener statListener)`
`void`	`changedUpdate(DocumentEvent e)`
`protected void`	`disableDetectMode()` Disables detect mode and deactivates buttons.
`void`	`dispose()`
`void`	`exportMarkers()`
`Vector<JRadioButton>`	`getButtonVector()`
`int`	`getCellBoundaryChannel()`
`CellCntrMarkerVector`	`getCurrentMarkerVector()`
`private String`	`getFilePath(JFrame parent, String dialogMessage, int dialogType)`
`void`	`handleALDOperatorCollectionEvent(de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent event)`
`void`	`handleValueChangeEvent(de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent event)`
`private void`	`initGUI()`
`private void`	`initializeImage()` Method to initialize internal image data from focussed GUI image.
`protected void`	`initProgressWin()` Setup the window for informing the user about progress.
`void`	`insertUpdate(DocumentEvent e)`
`void`	`itemStateChanged(ItemEvent e)`
`void`	`loadMarkers()`
`private JButton`	`makeButton(String name, String tooltip)`
`private JTextField`	`makeDynamicTextArea()`
`private JRadioButton`	`makeDynRadioButton(int id, CellCntrMarkerVector mv)` Initializes the radio buttons to select the marker type.
`void`	`measure()`
`void`	`notifyListeners(loci.common.StatusEvent e)`
`(package private) void`	`populateTxtFields()`
`void`	`removeStatusListener(loci.common.StatusListener statListener)`
`void`	`removeUpdate(DocumentEvent e)`
`void`	`report()`
`void`	`reset()` Delete all markers.
`void`	`resetSelectedCounter()` Delete markers of selected counter typel
`void`	`setButtonVector(Vector<JRadioButton> buttonVector)`
`void`	`setCurrentMarkerVector(CellCntrMarkerVector currMarkerVector)`
`static void`	`setType(int type)`
`private void`	`setupAboutBoxIcon()` Initializes the icon for the about box.
`protected void`	`showAboutBox()` Show MiToBo About Box window.
`protected void`	`showProgressWin()` Displays progress window in the center of the image.
`void`	`statusUpdated(loci.common.StatusEvent e)`
`void`	`switchContours()`
`void`	`switchMarkers()`
`void`	`switchNumbers()`
`private void`	`updateChooserButton(DocumentEvent e)` Method to enable or disable the color chooser button linked with document.
`private void`	`validateLayout()`

Methods inherited from class java.awt.Frame
addNotify, getCursorType, getExtendedState, getFrames, getIconImage, getMaximizedBounds, getMenuBar, getState, getTitle, isResizable, isUndecorated, remove, removeNotify, setBackground, setCursor, setExtendedState, setMaximizedBounds, setMenuBar, setOpacity, setResizable, setShape, setState, setTitle, setUndecorated

Methods inherited from class java.awt.Window
addPropertyChangeListener, addPropertyChangeListener, addWindowFocusListener, addWindowListener, addWindowStateListener, applyResourceBundle, applyResourceBundle, createBufferStrategy, createBufferStrategy, getBackground, getBufferStrategy, getFocusableWindowState, getFocusCycleRootAncestor, getFocusOwner, getFocusTraversalKeys, getIconImages, getInputContext, getListeners, getLocale, getModalExclusionType, getMostRecentFocusOwner, getOpacity, getOwnedWindows, getOwner, getOwnerlessWindows, getShape, getToolkit, getType, getWarningString, getWindowFocusListeners, getWindowListeners, getWindows, getWindowStateListeners, hide, isActive, isAlwaysOnTop, isAlwaysOnTopSupported, isAutoRequestFocus, isFocusableWindow, isFocusCycleRoot, isFocused, isLocationByPlatform, isOpaque, isShowing, isValidateRoot, pack, paint, postEvent, processEvent, processWindowFocusEvent, processWindowStateEvent, removeWindowFocusListener, removeWindowListener, removeWindowStateListener, reshape, setAlwaysOnTop, setAutoRequestFocus, setBounds, setBounds, setCursor, setFocusableWindowState, setFocusCycleRoot, setIconImages, setLocation, setLocation, setLocationByPlatform, setLocationRelativeTo, setMinimumSize, setModalExclusionType, setSize, setSize, setType, setVisible, show, toBack, toFront

Methods inherited from class java.awt.Container
add, add, add, add, add, addContainerListener, applyComponentOrientation, areFocusTraversalKeysSet, countComponents, deliverEvent, doLayout, findComponentAt, findComponentAt, getAlignmentX, getAlignmentY, getComponent, getComponentAt, getComponentAt, getComponentCount, getComponents, getComponentZOrder, getContainerListeners, getFocusTraversalPolicy, getInsets, getLayout, getMaximumSize, getMinimumSize, getMousePosition, getPreferredSize, insets, invalidate, isAncestorOf, isFocusCycleRoot, isFocusTraversalPolicyProvider, isFocusTraversalPolicySet, layout, list, list, locate, minimumSize, paintComponents, preferredSize, print, printComponents, processContainerEvent, remove, removeAll, removeContainerListener, setComponentZOrder, setFocusTraversalKeys, setFocusTraversalPolicy, setFocusTraversalPolicyProvider, setFont, transferFocusDownCycle, validate, validateTree

Methods inherited from class java.awt.Component
action, add, addComponentListener, addFocusListener, addHierarchyBoundsListener, addHierarchyListener, addInputMethodListener, addKeyListener, addMouseListener, addMouseMotionListener, addMouseWheelListener, bounds, checkImage, checkImage, coalesceEvents, contains, contains, createImage, createImage, createVolatileImage, createVolatileImage, disable, disableEvents, dispatchEvent, enable, enable, enableEvents, enableInputMethods, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, firePropertyChange, getBaseline, getBaselineResizeBehavior, getBounds, getBounds, getColorModel, getComponentListeners, getComponentOrientation, getCursor, getDropTarget, getFocusListeners, getFocusTraversalKeysEnabled, getFont, getFontMetrics, getForeground, getGraphicsConfiguration, getHeight, getHierarchyBoundsListeners, getHierarchyListeners, getIgnoreRepaint, getInputMethodListeners, getInputMethodRequests, getKeyListeners, getLocation, getLocation, getLocationOnScreen, getMouseListeners, getMouseMotionListeners, getMousePosition, getMouseWheelListeners, getName, getParent, getPeer, getPropertyChangeListeners, getPropertyChangeListeners, getSize, getSize, getTreeLock, getWidth, getX, getY, gotFocus, handleEvent, hasFocus, imageUpdate, inside, isBackgroundSet, isCursorSet, isDisplayable, isDoubleBuffered, isEnabled, isFocusable, isFocusOwner, isFocusTraversable, isFontSet, isForegroundSet, isLightweight, isMaximumSizeSet, isMinimumSizeSet, isPreferredSizeSet, isValid, isVisible, keyDown, keyUp, list, list, list, location, lostFocus, mouseDown, mouseDrag, mouseEnter, mouseExit, mouseMove, mouseUp, move, nextFocus, paintAll, prepareImage, prepareImage, printAll, processComponentEvent, processFocusEvent, processHierarchyBoundsEvent, processHierarchyEvent, processInputMethodEvent, processKeyEvent, processMouseEvent, processMouseMotionEvent, processMouseWheelEvent, removeComponentListener, removeFocusListener, removeHierarchyBoundsListener, removeHierarchyListener, removeInputMethodListener, removeKeyListener, removeMouseListener, removeMouseMotionListener, removeMouseWheelListener, removePropertyChangeListener, removePropertyChangeListener, repaint, repaint, repaint, requestFocus, requestFocus, requestFocusInWindow, requestFocusInWindow, resize, resize, revalidate, setComponentOrientation, setDropTarget, setEnabled, setFocusable, setFocusTraversalKeysEnabled, setForeground, setIgnoreRepaint, setLocale, setMaximumSize, setName, setPreferredSize, show, size, toString, transferFocus, transferFocusBackward, transferFocusUpCycle

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.awt.MenuContainer
getFont, postEvent

Field Detail

ADD
```
private static final String ADD
```
See Also:

Constant Field Values

REMOVE
```
private static final String REMOVE
```
See Also:

Constant Field Values

INITIALIZE
```
private static final String INITIALIZE
```
See Also:

Constant Field Values

RESULTS
```
private static final String RESULTS
```
See Also:

Constant Field Values

DELETE
```
private static final String DELETE
```
See Also:

Constant Field Values

KEEPORIGINAL

private static final String KEEPORIGINAL

See Also:: Constant Field Values

SHOWMARKERS

private static final String SHOWMARKERS

See Also:: Constant Field Values

SHOWNUMBERS

private static final String SHOWNUMBERS

See Also:: Constant Field Values

SHOWALL
```
private static final String SHOWALL
```
See Also:

Constant Field Values

RESET
```
private static final String RESET
```
See Also:

Constant Field Values

RESETCOUNTER

private static final String RESETCOUNTER

See Also:: Constant Field Values

EXPORTMARKERS

private static final String EXPORTMARKERS

See Also:: Constant Field Values

LOADMARKERS

private static final String LOADMARKERS

See Also:: Constant Field Values

EXPORTIMG
```
private static final String EXPORTIMG
```
See Also:

Constant Field Values

MEASURE
```
private static final String MEASURE
```
See Also:

Constant Field Values

ABOUT
```
private static final String ABOUT
```
See Also:

Constant Field Values

QUIT
```
private static final String QUIT
```
See Also:

Constant Field Values

DETECT
```
private static final String DETECT
```
See Also:

Constant Field Values

FILTER
```
private static final String FILTER
```
See Also:

Constant Field Values

SELECT
```
private static final String SELECT
```
See Also:

Constant Field Values

defaultColors
```
private static final Color[] defaultColors
```
Default colors to be used for the first 8 markers.

pFilter
```
protected CellCntrRegionFilterFrame pFilter
```
Frame for filtering segmented regions in a user-friendly manner.

typeVector

protected Vector<CellCntrMarkerVector> typeVector

Keeps track of the marker vectors.

dynRadioVector
```
protected Vector<JRadioButton> dynRadioVector
```
Keeps track of the radio buttons for type selection.

dynColorChooserVector

protected Vector<de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent> dynColorChooserVector

Keeps track of the color choosers.

txtFieldVector
```
private Vector<JTextField> txtFieldVector
```
Keeps track of the text fields showing numbers of markers.

markerVector

private CellCntrMarkerVector markerVector

currentMarkerVector

protected CellCntrMarkerVector currentMarkerVector

dynPanel
```
protected JPanel dynPanel
```

dynButtonPanel
```
protected JPanel dynButtonPanel
```

statButtonPanel
```
protected JPanel statButtonPanel
```

dynTxtPanel
```
protected JPanel dynTxtPanel
```

dynColorPanel
```
protected JPanel dynColorPanel
```

showBordersBox
```
protected JCheckBox showBordersBox
```

newCheck
```
protected JCheckBox newCheck
```

markersCheck
```
protected JCheckBox markersCheck
```

numbersCheck
```
protected JCheckBox numbersCheck
```

showAllCheck
```
protected JCheckBox showAllCheck
```

spChannelBoundaries
```
protected JSpinner spChannelBoundaries
```

spmChannelBoundaries

protected SpinnerNumberModel spmChannelBoundaries

opConfPanel

protected CellCounter.CellCounterDetectOperatorConfigPanel opConfPanel

radioGrp
```
protected ButtonGroup radioGrp
```

channelGrp
```
protected ButtonGroup channelGrp
```

ch1Button
```
protected JRadioButton ch1Button
```

ch2Button
```
protected JRadioButton ch2Button
```

ch3Button
```
protected JRadioButton ch3Button
```

ch4Button
```
protected JRadioButton ch4Button
```

separator
```
protected JSeparator separator
```

addButton
```
protected JButton addButton
```

removeButton
```
protected JButton removeButton
```

initializeButton
```
protected JButton initializeButton
```

detectButton
```
protected JButton detectButton
```

filterButton
```
protected JButton filterButton
```

selectButton
```
protected JButton selectButton
```

resultsButton
```
protected JButton resultsButton
```

deleteButton
```
protected JButton deleteButton
```

resetButton
```
protected JButton resetButton
```

exportButton
```
protected JButton exportButton
```

loadButton
```
protected JButton loadButton
```

exportimgButton
```
protected JButton exportimgButton
```

measureButton
```
protected JButton measureButton
```

keepOriginal
```
private boolean keepOriginal
```

detectMode
```
protected boolean detectMode
```
Avoids editing markers during pre-segmentation phase.

renderHighQuality
```
protected boolean renderHighQuality
```
Flag to enable or disable high quality rendering.

ic
```
protected CellCntrImageCanvas ic
```
Reference to associated image window.

img
```
private ij.ImagePlus img
```

counterImg
```
private ij.ImagePlus counterImg
```

detectImg
```
protected MTBImage detectImg
```
Copy of input image used for pre-segmentation of regions.

detectZSlice
```
protected int detectZSlice
```
Z-coordinate of currently selected slice, starting with 1 (!).

dynGrid
```
private GridLayout dynGrid
```

opCollection
```
MTBOperatorCollection<CellCounterDetectOperator> opCollection
```
Collection of available detectors for pre-segmentation.

opTypeIDs

public HashMap<String,Integer> opTypeIDs

progressMessageWin
```
protected JDialog progressMessageWin
```
Corresponding configuration and control window.

isJava14
```
private boolean isJava14
```

aboutIcon
```
protected ImageIcon aboutIcon
```
MiToBo icon to be shown in about box.

m_statusListeners

protected Vector<loci.common.StatusListener> m_statusListeners

Vector of installed StatusListener objects.

instance
```
static CellCounter instance
```

SAVE
```
public static final int SAVE
```
See Also:

Constant Field Values

OPEN
```
public static final int OPEN
```
See Also:

Constant Field Values

Constructor Detail
- CellCounter
```
public CellCounter()
```

Method Detail

initGUI
```
private void initGUI()
```

addMenuBar
```
private void addMenuBar()
```
Adds a menu bar to the frame.

setupAboutBoxIcon
```
private void setupAboutBoxIcon()
```
Initializes the icon for the about box.

makeDynamicTextArea

private JTextField makeDynamicTextArea()

populateTxtFields
```
void populateTxtFields()
```

makeDynRadioButton

private JRadioButton makeDynRadioButton(int id,
                                        CellCntrMarkerVector mv)

Initializes the radio buttons to select the marker type.

Parameters:: id - Index of the marker (in the range of 1-8)
Returns:: Created button.

makeButton

private JButton makeButton(String name,
                           String tooltip)

initializeImage
```
private void initializeImage()
```
Method to initialize internal image data from focussed GUI image.

validateLayout
```
private void validateLayout()
```

dispose
```
public void dispose()
```
Overrides:

dispose in class Window

actionPerformed
```
public void actionPerformed(ActionEvent event)
```
Specified by:

actionPerformed in interface ActionListener

itemStateChanged
```
public void itemStateChanged(ItemEvent e)
```
Specified by:

itemStateChanged in interface ItemListener

handleValueChangeEvent
```
public void handleValueChangeEvent(de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent event)
```
Specified by:

handleValueChangeEvent in interface de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeListener

showAboutBox
```
protected void showAboutBox()
```
Show MiToBo About Box window.

disableDetectMode
```
protected void disableDetectMode()
                          throws de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
```
Disables detect mode and deactivates buttons.

Throws:

de.unihalle.informatik.Alida.exceptions.ALDWorkflowException - Thrown in case of failure.

measure
```
public void measure()
```

reset
```
public void reset()
```
Delete all markers.

resetSelectedCounter
```
public void resetSelectedCounter()
```
Delete markers of selected counter typel

report
```
public void report()
```

loadMarkers

public void loadMarkers()
                 throws de.unihalle.informatik.Alida.exceptions.ALDWorkflowException

Throws:: de.unihalle.informatik.Alida.exceptions.ALDWorkflowException

exportMarkers
```
public void exportMarkers()
```

getFilePath

private String getFilePath(JFrame parent,
                           String dialogMessage,
                           int dialogType)

getCellBoundaryChannel
```
public int getCellBoundaryChannel()
```

getButtonVector

public Vector<JRadioButton> getButtonVector()

setButtonVector

public void setButtonVector(Vector<JRadioButton> buttonVector)

getCurrentMarkerVector

public CellCntrMarkerVector getCurrentMarkerVector()

setCurrentMarkerVector

public void setCurrentMarkerVector(CellCntrMarkerVector currMarkerVector)

setType
```
public static void setType(int type)
```

switchMarkers
```
public void switchMarkers()
```

switchNumbers
```
public void switchNumbers()
```

switchContours
```
public void switchContours()
```

insertUpdate
```
public void insertUpdate(DocumentEvent e)
```
Specified by:

insertUpdate in interface DocumentListener

removeUpdate
```
public void removeUpdate(DocumentEvent e)
```
Specified by:

removeUpdate in interface DocumentListener

changedUpdate
```
public void changedUpdate(DocumentEvent e)
```
Specified by:

changedUpdate in interface DocumentListener

updateChooserButton
```
private void updateChooserButton(DocumentEvent e)
```
Method to enable or disable the color chooser button linked with document.

Parameters:

e - Document event to be handled.

initProgressWin
```
protected void initProgressWin()
```
Setup the window for informing the user about progress.

showProgressWin
```
protected void showProgressWin()
```
Displays progress window in the center of the image.

handleALDOperatorCollectionEvent
```
public void handleALDOperatorCollectionEvent(de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEvent event)
```
Specified by:

handleALDOperatorCollectionEvent in interface de.unihalle.informatik.Alida.operator.events.ALDOperatorCollectionEventListener

addStatusListener
```
public void addStatusListener(loci.common.StatusListener statListener)
```
Specified by:

addStatusListener in interface loci.common.StatusReporter

notifyListeners
```
public void notifyListeners(loci.common.StatusEvent e)
```
Specified by:

notifyListeners in interface loci.common.StatusReporter

removeStatusListener
```
public void removeStatusListener(loci.common.StatusListener statListener)
```
Specified by:

removeStatusListener in interface loci.common.StatusReporter

statusUpdated
```
public void statusUpdated(loci.common.StatusEvent e)
```
Specified by:

statusUpdated in interface loci.common.StatusListener

Class CellCounter

Nested Class Summary

Nested classes/interfaces inherited from class javax.swing.JFrame

Nested classes/interfaces inherited from class java.awt.Frame

Nested classes/interfaces inherited from class java.awt.Window

Nested classes/interfaces inherited from class java.awt.Container

Nested classes/interfaces inherited from class java.awt.Component

Field Summary

Fields inherited from class javax.swing.JFrame

Fields inherited from class java.awt.Frame

Fields inherited from class java.awt.Component

Fields inherited from interface javax.swing.WindowConstants

Fields inherited from interface java.awt.image.ImageObserver

Constructor Summary

Method Summary

Methods inherited from class javax.swing.JFrame

Methods inherited from class java.awt.Frame

Methods inherited from class java.awt.Window

Methods inherited from class java.awt.Container

Methods inherited from class java.awt.Component

Methods inherited from class java.lang.Object

Methods inherited from interface java.awt.MenuContainer

Field Detail

ADD

REMOVE

INITIALIZE

RESULTS

DELETE

KEEPORIGINAL

SHOWMARKERS

SHOWNUMBERS

SHOWALL

RESET

RESETCOUNTER

EXPORTMARKERS

LOADMARKERS

EXPORTIMG

MEASURE

ABOUT

QUIT

DETECT

FILTER

SELECT

defaultColors

pFilter

typeVector

dynRadioVector

dynColorChooserVector

txtFieldVector

markerVector

currentMarkerVector

dynPanel

dynButtonPanel

statButtonPanel

dynTxtPanel

dynColorPanel

showBordersBox

newCheck

markersCheck

numbersCheck

showAllCheck

spChannelBoundaries

spmChannelBoundaries

opConfPanel

radioGrp

channelGrp

ch1Button

ch2Button

ch3Button

ch4Button

separator

addButton

removeButton

initializeButton

detectButton

filterButton

selectButton

resultsButton

deleteButton

resetButton