@ALDAOperator(genericExecutionMode=ALL, level=APPLICATION) public class ALDClusterExperiment extends ALDOperator
First, optionally the data are normalized. Second, again optionally, the data are subjected to a PCA. Finally clustered via k-means.
ALDOperator.ConstructioMode, ALDOperator.HidingModecompleteDAG, name, operatorExecutionEventlistenerList, portHashAccess, verbose, versionProvider| Constructor and Description |
|---|
ALDClusterExperiment()
Default constructor.
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ALDClusterExperiment(ExperimentalData _experiment)
Constructor.
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| Modifier and Type | Method and Description |
|---|---|
List<Set<Integer>> |
getClusters()
Get value of result.
|
Boolean |
getDoNormalize() |
Boolean |
getDoPCA() |
ExperimentalData |
getExperiment()
Get value of experiment.
|
ExperimentalData |
getNormalizedExperiment() |
protected void |
operate()
This method does the actual work and needs to be implemented by every
subclass.
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void |
setDoNormalize(Boolean doNormalize) |
void |
setDoPCA(Boolean doPCA) |
void |
setExperiment(ExperimentalData value)
Set value of data.
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addOperatorExecutionProgressEventListener, addParameter, addParameter, addParameterUnconditioned, fieldContained, fireOperatorExecutionProgressEvent, getALDPortHashAccessKey, getConstructionMode, getHidingMode, getInInoutNames, getInInoutNames, getInNames, getInOutNames, getMissingRequiredInputs, getName, getNumParameters, getOutInoutNames, getOutNames, getParameter, getParameterDescriptor, getParameterNames, getSupplementalNames, getVerbose, getVersion, handleOperatorExecutionProgressEvent, hasInOutParameters, hasParameter, isAnnotatedParameter, isConfigured, print, print, print, printInterface, printInterface, readHistory, readResolve, reinitializeParameterDescriptors, removeOperatorExecutionProgressEventListener, removeParameter, runOp, runOp, runOp, setConstructionMode, setConstructionMode, setConstructionMode, setHidingMode, setName, setParameter, setVerbose, toStringVerbose, unconfiguredItems, validate, validateCustom, validateGeneric, writeHistory, writeHistory, writeHistorypublic ALDClusterExperiment()
throws ALDOperatorException
ALDOperatorExceptionpublic ALDClusterExperiment(ExperimentalData _experiment) throws ALDOperatorException
_experiment - Experimental dataALDOperatorExceptionprotected void operate()
throws ALDOperatorException,
ALDProcessingDAGException
ALDOperatoroperate in class ALDOperatorALDOperatorExceptionALDProcessingDAGExceptionpublic List<Set<Integer>> getClusters()
public ExperimentalData getExperiment()
public void setExperiment(ExperimentalData value)
value - New value of datapublic Boolean getDoNormalize()
public void setDoNormalize(Boolean doNormalize)
doNormalize - the doNormalize to setpublic Boolean getDoPCA()
public void setDoPCA(Boolean doPCA)
doPCA - the doPCA to setpublic ExperimentalData getNormalizedExperiment()
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