| Package | Description |
|---|---|
| de.unihalle.informatik.Alida.dataconverter | |
| de.unihalle.informatik.Alida.dataio.provider.swing |
Package containing data I/O providers for GUIs based on Java Swing.
|
| de.unihalle.informatik.Alida.dataio.provider.swing.components | |
| de.unihalle.informatik.Alida.demo |
Demonstrator package of how to implement and use Alida operators.
|
| de.unihalle.informatik.Alida.grappa |
Contains all resources for the graphical programming editor Grappa.
|
| de.unihalle.informatik.Alida.gui |
Package containing GUI components for interactive operator selection/control.
|
| de.unihalle.informatik.Alida.operator |
Contains the core of Alida, i.e. the operator concept and processing graph stuff.
|
| de.unihalle.informatik.Alida.workflows |
Classes related to workflows in Alida.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
ALDNumberConverter.operate() |
| Constructor and Description |
|---|
ALDNumberConverter()
Default constructor.
|
ALDVectorNativeArrayConverter()
Default constructor.
|
| Modifier and Type | Method and Description |
|---|---|
protected ALDOperator |
ALDOperatorDataIOSwing.OperatorConfigWindow.setOperatorParameters(Field field,
Class<?> cl) |
| Modifier and Type | Method and Description |
|---|---|
HashMap<ALDParameterDescriptor,String> |
ALDOperatorParameterPanel.validateOperatorParameters(boolean deepValidate)
Check if operator is ready to run.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
ALDKmeansOp.operate() |
protected void |
ApplyToMatrix.operate() |
protected void |
FilterExperimentalDataOp.operate() |
protected void |
ALDPCAOp.operate() |
protected void |
ALDClusterExperiment.operate() |
protected void |
NormalizeExperimentalDataOp.operate() |
protected void |
MatrixSum.operate() |
| Constructor and Description |
|---|
ALDArrayMean()
Default constructor.
|
ALDArrayMean(Double[] data)
Constructor.
|
ALDArrayMin()
Default constructor.
|
ALDArrayMin(Double[] data)
Constructor.
|
ALDArraySum()
Default constructor.
|
ALDArraySum(Double[] data)
Constructor.
|
ALDCalcMeanArray()
Default constructor.
|
ALDCalcMeanArray(Double[] _data)
Constructor.
|
ALDClusterExperiment()
Default constructor.
|
ALDClusterExperiment(ExperimentalData _experiment)
Constructor.
|
ALDDemoOpControllable()
Default constructor.
|
ALDKmeansOp()
Default constructor.
|
ALDKmeansOp(ExperimentalData _experiment)
Constructor.
|
ALDParameterTester()
Default constructor.
|
ALDPCAOp()
Default constructor.
|
ALDPCAOp(ExperimentalData _experiment)
Constructor.
|
ALDSummarizeArrayOp()
Default constructor.
|
ALDTransposeMatrix()
Default constructor.
|
ALDTransposeMatrix(int[][] _data)
Constructor.
|
ApplyToMatrix()
Default constructor.
|
ApplyToMatrix(Double[][] _matrix)
Constructor.
|
FilterExperimentalDataOp()
Default constructor.
|
FilterExperimentalDataOp(ExperimentalData _experiment)
Constructor.
|
MatrixSum()
Default constructor.
|
MatrixSum(Double[][] _matrix)
Constructor.
|
NormalizeExperimentalDataOp()
Default constructor.
|
NormalizeExperimentalDataOp(ExperimentalData _experiment)
Constructor.
|
| Modifier and Type | Method and Description |
|---|---|
protected ALDOperatorConfigurationFrame |
ALDGrappaWorkbenchTab.getNewConfigWin(ALDOperator op)
Generate a new configuration window.
|
| Modifier and Type | Method and Description |
|---|---|
Iterator<Object> |
ALDOperatorControlFrame.getInputParamIterator(String param)
Returns an iterator for a specific input parameter in batch mode.
|
protected ALDOperatorControlFrame |
ALDOperatorGUIExecutionProxy.getNewConfigWin(ALDOperator op)
Generate a new configuration window.
|
void |
ALDOperatorGUIExecutionProxy.runWorkflowInBatchMode() |
| Constructor and Description |
|---|
ALDOperatorConfigurationFrame(ALDOperator _op)
Constructs a control frame for an operator object.
|
ALDOperatorControlFrame(ALDOperator _op,
ALDOperatorGUIExecutionProxy em)
Constructs a new control frame for an operator object.
|
| Modifier and Type | Method and Description |
|---|---|
ALDOperator |
ALDOperatorLocation.createOperator()
Create an
ALDOperator form this location object. |
Object |
ALDOperator.getParameter(String name)
Get the value of a parameter specified by name.
|
ALDOpParameterDescriptor |
ALDOperator.getParameterDescriptor(String name)
Get the parameter descriptor for given name.
|
Boolean |
ALDOperator.getVerbose()
Return the verbose state of this opertor.
|
protected void |
ALDOperatorControllable.operate() |
protected abstract void |
ALDOperator.operate()
This method does the actual work and needs to be implemented by every
subclass.
|
void |
ALDOperator.runOp()
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
|
void |
ALDOperator.runOp(ALDOperator.HidingMode hidingMode)
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
|
void |
ALDOperator.runOp(boolean hidden)
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
|
void |
ALDOperator.setParameter(String name,
Object value)
Set the value of a parameter specified by name.
|
void |
ALDOperator.setVerbose(Boolean verbose)
Set the verbose state of this opertor.
|
void |
ALDOperator.validate()
Validates the parameters and inputs of this operator.
|
void |
ALDOperator.validateCustom()
Operator specific validation of parameters and inputs.
|
void |
ALDOperator.validateGeneric()
Generic validation of the in and inout parameters of this operator.
|
protected void |
ALDPortHashAccess.writeHistory(Object obj,
String filename)
Deprecated.
|
static void |
ALDOperator.writeHistory(Object obj,
String filename)
Write the processing history if any to a graphml file.
|
protected void |
ALDPortHashAccess.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType)
Deprecated.
|
static void |
ALDOperator.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType)
Write the processing history if any to a graphml file.
|
protected void |
ALDPortHashAccess.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType,
boolean ignoreHiding)
Write the processing history (if available) to a graphml file.
|
static void |
ALDOperator.writeHistory(Object obj,
String filename,
ALDProcessingDAG.HistoryType historyType,
boolean ignoreHiding)
Write the processing history if any to a graphml file.
|
| Constructor and Description |
|---|
ALDOperator()
This constructor initializes an operator.
|
ALDOperatorControllable()
Default constructor.
|
| Modifier and Type | Method and Description |
|---|---|
Object |
ALDWorkflow.getParameter(String name) |
protected void |
ALDWorkflow.operate() |
void |
ALDWorkflow.setParameter(String name,
Object value) |
| Constructor and Description |
|---|
ALDWorkflow()
Constructor for an untitled workflow in a grappa context.
|
ALDWorkflow(ALDWorkflow.ALDWorkflowContextType context)
Constructor for an untitled workflow
|
ALDWorkflow(String name)
Constructor for a workflow in a grappa context.
|
ALDWorkflow(String name,
ALDWorkflow.ALDWorkflowContextType context)
Constructor
|
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