| Package | Description |
|---|---|
| de.unihalle.informatik.Alida.dataconverter | |
| de.unihalle.informatik.Alida.dataio.provider.cmdline |
Package containing data I/O providers for commandline presenters.
|
| de.unihalle.informatik.Alida.dataio.provider.swing |
Package containing data I/O providers for GUIs based on Java Swing.
|
| de.unihalle.informatik.Alida.dataio.provider.swing.components | |
| de.unihalle.informatik.Alida.demo |
Demonstrator package of how to implement and use Alida operators.
|
| de.unihalle.informatik.Alida.grappa |
Contains all resources for the graphical programming editor Grappa.
|
| de.unihalle.informatik.Alida.gui |
Package containing GUI components for interactive operator selection/control.
|
| de.unihalle.informatik.Alida.operator |
Contains the core of Alida, i.e. the operator concept and processing graph stuff.
|
| de.unihalle.informatik.Alida.operator.events |
Definitions of Alida events and corresponding reporter and listener interfaces.
|
| de.unihalle.informatik.Alida.tools |
Tools for generic operator execution.
|
| de.unihalle.informatik.Alida.workflows |
Classes related to workflows in Alida.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ALDNumberConverter
Converts numbers.
|
class |
ALDVectorNativeArrayConverter
Converts 1D arrays of native data types to
Vector data types. |
| Modifier and Type | Method and Description |
|---|---|
static LinkedList<String> |
ALDParametrizedClassDataIOCmdline.lookupParameternames(ALDOperator op,
String pre)
Lookup all parameter names of the operator with prefix
pre. |
Object |
ALDParametrizedClassDataIOCmdline.parse(Field field,
Class<?> cl,
String valueString,
ALDOperator op)
Generic Parser for parametrized classes and ALDOperators.
|
| Modifier and Type | Field and Description |
|---|---|
protected ALDOperator |
ALDOperatorDataIOSwing.op
The operator of this frame, may be abstract!
|
| Modifier and Type | Method and Description |
|---|---|
protected ALDOperator |
ALDOperatorDataIOSwing.OperatorConfigWindow.setOperatorParameters(Field field,
Class<?> cl) |
| Modifier and Type | Method and Description |
|---|---|
protected HashMap<ALDOpParameterDescriptor,String> |
ALDOperatorDataIOSwing.OperatorConfigWindow.updateOperator(ALDOperator oper)
Update operator linked to window.
|
| Constructor and Description |
|---|
OperatorConfigWindow(ALDOperator ops,
Class<?> cl,
ALDParameterDescriptor descr,
boolean editable)
Default constructor.
|
| Modifier and Type | Method and Description |
|---|---|
HashMap<ALDOpParameterDescriptor,String> |
ALDOperatorParameterPanel.setNewOperator(ALDOperator op)
Sets a new operator for the panel.
|
| Constructor and Description |
|---|
ALDOperatorParameterPanel(ALDOperator op,
Parameter.ExpertMode mode,
boolean topLevel,
ALDSwingValueChangeListener listener)
Default constructor.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ALDArrayMean
Operator returning the mean value of an 1D array.
|
class |
ALDArrayMin
Operator returning the minimum value of an 1D array.
|
class |
ALDArraySum
Operator returning the sum of an 1D array.
|
class |
ALDCalcMeanArray
Operator for calculating the mean of given double values.
|
class |
ALDClusterExperiment
Demo operator to cluster experimental data.
|
class |
ALDDemoOpControllable
Controllable demo operator for testing interaction.
|
class |
ALDDynamicOp
Operator to test dynamic parameters and callback function.
|
class |
ALDKmeansOp
Demo operator clustering experimental data using k-means.
|
class |
ALDParameterTester
Dummy operator class for demo and testing of input parameter types.
|
class |
ALDPCAOp
Demo operator computing the PCA for experimental data.
|
class |
ALDSummarizeArrayOp
A abstract summarizing operator taking a 1D array as input and
return a summarizing scalar.
|
class |
ALDTransposeMatrix
Operator for transposing matrices.
|
class |
ApplyToMatrix
Demo operator to apply a summarizing operation to a 2D array in row or column wise fashion.
|
class |
FilterExperimentalDataOp
Demo operator to filter experimental data.
|
class |
MatrixSum
Demo operator to calculate colum or row sums of a 2D array.
|
class |
NormalizeExperimentalDataOp
Demo operator to normalize experimental data.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
ALDGrappaWorkbenchTab.addPortsToNode(ALDOperator op,
com.mxgraph.model.mxCell v)
Adds the ports of the operator's parameters to the given node.
|
protected void |
ALDGrappaWorkbenchTab.copyWorkflowNodeLinksOnly(ALDOperator srcOp,
com.mxgraph.model.mxCell srcNode,
ALDOperator newOp,
int posX,
int posY)
Copies only the links of a workflow node to a new node of same type.
|
protected ALDOperatorConfigurationFrame |
ALDGrappaWorkbenchTab.getNewConfigWin(ALDOperator op,
ALDGrappaWorkbenchTab.ParameterUpdateListener pListen)
Generate a new configuration window.
|
protected void |
ALDGrappaWorkbenchTab.handleAddNodeEvent(ALDOperator op,
ALDWorkflowNodeID id,
int posX,
int posY)
Adds a node to the workflow graph.
|
| Modifier and Type | Field and Description |
|---|---|
protected ALDOperator |
ALDOperatorConfigurationFrame.op
The operator associated with this frame.
|
| Modifier and Type | Method and Description |
|---|---|
ALDOperator |
ALDOperatorConfigurationFrame.getOperator()
Get a reference to the operator object.
|
| Modifier and Type | Method and Description |
|---|---|
protected ALDOperatorControlFrame |
ALDOperatorGUIExecutionProxy.getNewConfigWin(ALDOperator op)
Generate a new configuration window.
|
protected void |
ALDOperatorGUIExecutionProxy.handleAddNodeEvent(ALDOperator op,
ALDWorkflowNodeID id)
Adds a node to the workflow graph.
|
void |
ALDOperatorConfigurationFrame.updateOperator(ALDOperator newOp)
Updates the configuration window with settings of a new operator.
|
| Constructor and Description |
|---|
ALDBatchOperatorResultFrame(ALDOperator op,
HashMap<String,ALDBatchRunResultInfo> batchInfoMap,
ALDBatchOutputManagerSwing.ProviderInteractionLevel pLevel)
Constructor.
|
ALDOperatorConfigurationFrame(ALDOperator _op,
ALDOpParameterUpdateEventListener pListen)
Constructs a control frame for an operator object.
|
ALDOperatorControlFrame(ALDOperator _op,
ALDOperatorGUIExecutionProxy em,
ALDOpParameterUpdateEventListener pL)
Constructs a new control frame for an operator object.
|
ALDOperatorParamDisplayFrame(ALDOperator operator,
ALDDataIOManagerSwing.ProviderInteractionLevel pLevel)
Constructor.
|
ALDOperatorResultFrame(ALDOperator operator,
ALDDataIOManagerSwing.ProviderInteractionLevel pLevel)
Constructor.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ALDOperatorControllable
Operator class with inherent event handling for execution control.
|
| Modifier and Type | Method and Description |
|---|---|
ALDOperator |
ALDOperatorLocation.createOperator()
Create an
ALDOperator form this location object. |
| Modifier and Type | Method and Description |
|---|---|
Class<? extends ALDOperator> |
ALDOpNode.getOperatorClass()
Get the class object of the operator represented by this opNode.
|
| Modifier and Type | Method and Description |
|---|---|
static LinkedList<String> |
ALDParametrizedClassDataIOXmlbeans.lookupParameternames(ALDOperator op,
String pre)
Lookup all parameter names of the operator with prefix
pre. |
void |
ALDOpParameterDescriptor.print(PrintStream outfile,
ALDOperator op)
Print this descriptor to outfile.
|
| Constructor and Description |
|---|
ALDOpNode(ALDOperator op,
ALDOperator.HidingMode hidingMode)
Construct an
ALDOpNode for the operator op and hidingMode |
| Modifier and Type | Method and Description |
|---|---|
ALDOperator |
ALDOperatorExecutionProgressEvent.getOriginatingOperator() |
| Constructor and Description |
|---|
ALDOperatorExecutionProgressEvent(Object s,
String msg,
ALDOperator originatingOperator)
Constructor with message.
|
| Modifier and Type | Method and Description |
|---|---|
protected ALDOperator |
ALDOpRunner.getOperator(String opName)
This method is called to instantiate the ALDOperator.
|
| Modifier and Type | Class and Description |
|---|---|
class |
ALDWorkflow
Class to model a workflow in Alida.
|
| Modifier and Type | Method and Description |
|---|---|
ALDOperator |
ALDWorkflowNode.getOperator()
Returns the operator associated with this node.
|
ALDOperator |
ALDWorkflow.getOperator(ALDWorkflowNodeID nodeId)
Get the operator associated with
nodeId. |
| Modifier and Type | Method and Description |
|---|---|
ALDWorkflowNodeID |
ALDWorkflow.createNode(ALDOperator op)
Add a new operator to this workflow.
|
protected void |
ALDWorkflowNode.setOperator(ALDOperator newOp)
Sets the operator associated with this node.
|
void |
ALDWorkflow.setOperator(ALDWorkflowNodeID nodeId,
ALDOperator newOp)
Set the operator associated with
nodeId. |
| Constructor and Description |
|---|
ALDWorkflowNode(ALDWorkflow parentWorkflow,
ALDOperator op)
Create a node
|
ALDWorkflowNode(ALDWorkflow parentWorkflow,
ALDOperator op,
boolean isInteriorShadowNode)
Create a node
|
Copyright © 2010–2015 Martin Luther University Halle-Wittenberg, Institute of Computer Science, Pattern Recognition and Bioinformatics. All rights reserved.