- aboutIcon - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
Icon to be shown in about box.
- aboutIcon - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
Icon to be shown in about box.
- accept(File) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuGraph
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Validate the operator parameters by requesting values from the panels.
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
-
- actionPerformed(ActionEvent) - Method in class de.unihalle.informatik.Alida.gui.OnlineHelpMissingHelpListener
-
- actionPosition_x - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
-
- actionPosition_y - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
-
- actionsOnWorkflow - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
List of actions performed on the Alida workflow object.
- activateBatchMode - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Checkbox for enabling/disabling batch mode.
- addALDConfigurationEventListener(ALDConfigurationEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
- addALDConfigurationEventListener(ALDConfigurationEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter
-
Adds a listener to this reporter.
- addALDControlEventListener(ALDControlEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
- addALDControlEventListener(ALDControlEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter
-
Adds a listener to this reporter.
- addALDWorkflowClassEventListener(ALDWorkflowClassEventListener) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add a listener for events thrown by the class ALDWorkflow (not an instance).
- addALDWorkflowEventListener(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- addALDWorkflowEventListener(ALDWorkflowEventListener) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter
-
Adds a listener to this reporter.
- addBatchInputParameter(ALDParameterDescriptor, ButtonGroup, JComponent[][], int) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
- addCloseButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Adds set of control buttons to the input panel.
- addContextSpecificButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Adds set of control buttons to the input panel.
- addContextSpecificButtonPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Adds set of control buttons to the input panel.
- additionalOperators(ALDAOperator.Level) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
This method may be overridden in extending classes to add operators to the
list of available operators.
- addNewWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Adds a new workflow (tab) to the workbench.
- addNodeToWorkflow(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- addOperatorExecutionProgressEventListener(ALDOperatorExecutionProgressEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Adds a listener to this reporter.
- addParameter(ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add a new parameter to this workflow.
- addParameterChangeEventListener(ALDOpParameterChangeEventListener) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Adds a listener to this reporter.
- addValueChangeEventListener(ALDSwingValueChangeListener) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
-
Adds a listener to this reporter.
- ALD_EXTENSION - Static variable in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
-
File extension of Alida processing history files.
- ALDAOperator - Annotation Type in de.unihalle.informatik.Alida.annotations
-
ALDOperators may be annotated with this annotation in order to enable
generic execution or documentation facilities for the operator.
- ALDAOperator.ExecutionMode - Enum in de.unihalle.informatik.Alida.annotations
-
Enumerates the different types of user interfaces to
be automatically generated for this operator.
- ALDAOperator.Level - Enum in de.unihalle.informatik.Alida.annotations
-
Enumerates the different levels of this operator.
- ALDArrayMean - Class in de.unihalle.informatik.Alida.demo
-
Operator returning the mean value of an 1D array.
- ALDArrayMean() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMean
-
Default constructor.
- ALDArrayMean(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMean
-
Constructor.
- ALDArrayMin - Class in de.unihalle.informatik.Alida.demo
-
Operator returning the minimum value of an 1D array.
- ALDArrayMin() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMin
-
Default constructor.
- ALDArrayMin(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArrayMin
-
Constructor.
- ALDArraySum - Class in de.unihalle.informatik.Alida.demo
-
Operator returning the sum of an 1D array.
- ALDArraySum() - Constructor for class de.unihalle.informatik.Alida.demo.ALDArraySum
-
Default constructor.
- ALDArraySum(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDArraySum
-
Constructor.
- ALDBatchInputIterator - Interface in de.unihalle.informatik.Alida.batch.provider.input
-
Super class for all input providers in Alida batch mode.
- ALDBatchInputIteratorSwing - Interface in de.unihalle.informatik.Alida.batch.provider.input.swing
-
Interface for Alida's automatic batch data I/O via GUIs based on Swing.
- ALDBatchInputManager - Class in de.unihalle.informatik.Alida.batch
-
Class to manage data inputs in batch processing with operators.
- ALDBatchInputManager() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
-
Default constructor.
- ALDBatchInputManagerSwing - Class in de.unihalle.informatik.Alida.batch
-
This class implements a batch provider mangager for batch processing
in the context of graphical user interfaces.
- ALDBatchInputManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.batch
-
Levels to enable/disable interactive provider behaviour.
- ALDBatchInputNativeArray1DSwing - Class in de.unihalle.informatik.Alida.batch.provider.input.swing
-
- ALDBatchInputNativeArray1DSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
-
- ALDBatchInputNumberSwing - Class in de.unihalle.informatik.Alida.batch.provider.input.swing
-
- ALDBatchInputNumberSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
-
- ALDBatchInputProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
-
Annotation for classes acting as Alida batch input providers and
implementing the
ALDBatchInputIterator interface.
- ALDBatchIOException - Exception in de.unihalle.informatik.Alida.exceptions
-
Exception thrown in batch mode data IO contexts.
- ALDBatchIOException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOException
-
- ALDBatchIOManagerException - Exception in de.unihalle.informatik.Alida.exceptions
-
Alida exception thrown by batch I/O managers.
- ALDBatchIOManagerException(ALDBatchIOManagerException.ALDBatchIOManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException
-
Constructor.
- ALDBatchIOManagerException.ALDBatchIOManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible exception types.
- ALDBatchIOProviderException - Exception in de.unihalle.informatik.Alida.exceptions
-
Alida exception thrown by batch data IO providers.
- ALDBatchIOProviderException(ALDBatchIOProviderException.ALDBatchIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException
-
Constructor.
- ALDBatchIOProviderException.ALDBatchIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible exception types.
- ALDBatchOperatorResultFrame - Class in de.unihalle.informatik.Alida.gui
-
Frame to display results of a batch run of an operator.
- ALDBatchOperatorResultFrame(ALDOperator, HashMap<String, ALDBatchRunResultInfo>, ALDBatchOutputManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDBatchOperatorResultFrame
-
Constructor.
- ALDBatchOutputManager - Class in de.unihalle.informatik.Alida.batch
-
Class to manage data outputs in batch processing with operators.
- ALDBatchOutputManager() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
-
Default constructor.
- ALDBatchOutputManagerSwing - Class in de.unihalle.informatik.Alida.batch
-
This class implements a DataIO manager for summarizing batch results
in the context of graphical user interfaces.
- ALDBatchOutputManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.batch
-
Levels to enable/disable interactive provider behaviour.
- ALDBatchOutputProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
-
- ALDBatchOutputSummarizer - Interface in de.unihalle.informatik.Alida.batch.provider.output
-
Super class for all output summarizers in Alida batch mode.
- ALDBatchOutputSummarizerSwing - Interface in de.unihalle.informatik.Alida.batch.provider.output.swing
-
Interface for Alida's automatic batch result data I/O via GUI based on Swing.
- ALDBatchRunResultInfo - Class in de.unihalle.informatik.Alida.batch
-
Info object summarizing all result data of a batch run.
- ALDBatchRunResultInfo() - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
-
Default constructor, should/can never be called from external.
- ALDBatchRunResultInfo(String) - Constructor for class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
-
Constructor.
- ALDCalcMeanArray - Class in de.unihalle.informatik.Alida.demo
-
Operator for calculating the mean of given double values.
- ALDCalcMeanArray() - Constructor for class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
-
Default constructor.
- ALDCalcMeanArray(Double[]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
-
Constructor.
- ALDChooseOpNameFrame - Class in de.unihalle.informatik.Alida.gui
-
Main window for selecting Alida annotated operators for running.
- ALDChooseOpNameFrame() - Constructor for class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
Constructor.
- ALDChooseOpNameFrame.MyMouseAdapter - Class in de.unihalle.informatik.Alida.gui
-
- ALDClassInfo - Class in de.unihalle.informatik.Alida.helpers
-
- ALDClassInfo() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDClassInfo
-
- ALDClassParameter - Annotation Type in de.unihalle.informatik.Alida.annotations
-
Member variables of classes annotated with
ALDParametrizedClass may
be annotated with this annotation to be automatically handled by Alida's
data I/O.
- ALDClusterExperiment - Class in de.unihalle.informatik.Alida.demo
-
Demo operator to cluster experimental data.
- ALDClusterExperiment() - Constructor for class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
Default constructor.
- ALDClusterExperiment(ExperimentalData) - Constructor for class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
Constructor.
- ALDCollectionDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
-
DataIO provider for collections from command line.
- ALDCollectionDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
-
- ALDCollectionDataIOHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
-
Class supplying support for generic loading/saving of Collections in Alida.
- ALDCollectionDataIOHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDCollectionDataIOHelper
-
- ALDCollectionDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Class for generic loading/saving of collections from/to GUI in Alida.
- ALDCollectionDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
-
- ALDCollectionDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
-
DataIO provider for collections xml using xmlbeans.
- ALDCollectionDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
-
- ALDConcReadWeakHashMap - Class in de.unihalle.informatik.Alida.helpers
-
A version of Hashtable that supports concurrent reading/exclusive writing.
- ALDConcReadWeakHashMap(int) - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Constructs a new, empty map with the specified initial
capacity and default load factor.
- ALDConcReadWeakHashMap() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Constructs a new, empty map with a default initial capacity
and load factor.
- ALDConcReadWeakHashMap.BarrierLock - Class in de.unihalle.informatik.Alida.helpers
-
A Serializable class for barrier lock.
- ALDConfigurationEvent - Class in de.unihalle.informatik.Alida.operator.events
-
Event type to configure operator execution.
- ALDConfigurationEvent(Object) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Constructor.
- ALDConfigurationEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Constructor with message.
- ALDConfigurationEventListener - Interface in de.unihalle.informatik.Alida.operator.events
-
Listener interface for `Alida` configuration events.
- ALDConfigurationEventReporter - Interface in de.unihalle.informatik.Alida.operator.events
-
Interface for classes that generate events of type `ALDConfigurationEvent`.
- ALDConfigurationValidator - Interface in de.unihalle.informatik.Alida.datatypes
-
A class implementing this interface provides methods to determine proper configuration
of an object.
- ALDControlEvent - Class in de.unihalle.informatik.Alida.operator.events
-
Event type for controlling operator threads.
- ALDControlEvent(Object, ALDControlEvent.ALDControlEventType) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDControlEvent
-
Default constructor.
- ALDControlEvent(Object, ALDControlEvent.ALDControlEventType, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDControlEvent
-
Default constructor with arguments.
- ALDControlEvent.ALDControlEventType - Enum in de.unihalle.informatik.Alida.operator.events
-
Event types on which a controllable operator should react.
- ALDControlEventListener - Interface in de.unihalle.informatik.Alida.operator.events
-
Listener interface for `Alida` control events.
- ALDControlEventReporter - Interface in de.unihalle.informatik.Alida.operator.events
-
Interface for classes that generate events of type `ALDControlEvent`.
- ALDConverterManagerException() - Constructor for class de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDConverterManagerException
-
- ALDData - Class in de.unihalle.informatik.Alida.operator
-
This is the abstract class from which all data classes have to be derived
which want properties to be recored when returned from an operator as result.
- ALDData() - Constructor for class de.unihalle.informatik.Alida.operator.ALDData
-
Create a data object.
- ALDDataConverter - Interface in de.unihalle.informatik.Alida.dataconverter
-
Super class for all data converter providers in Alida.
- ALDDataConverterException - Exception in de.unihalle.informatik.Alida.exceptions
-
Alida exception thrown by data type converters.
- ALDDataConverterException(ALDDataConverterException.ALDDataIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException
-
Constructor.
- ALDDataConverterException.ALDDataIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible exception types.
- ALDDataConverterManager - Class in de.unihalle.informatik.Alida.dataconverter
-
This class implements a provider manager for data conversion.
- ALDDataConverterManager.ALDSourceTargetClassPair - Class in de.unihalle.informatik.Alida.dataconverter
-
A pair of source and target pair (of a converter)
- ALDDataConverterManagerException - Exception in de.unihalle.informatik.Alida.exceptions
-
- ALDDataConverterManagerException(ALDProviderManagerException.ALDProviderManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterManagerException
-
- ALDDataConverterProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
-
Annotation for classes acting as Alida data conversion provider and
implementing the ALDDataConverter interface.
- ALDDataIO - Interface in de.unihalle.informatik.Alida.dataio.provider
-
This is the interface for Alida's dataIO provider.
- ALDDataIOCmdline - Interface in de.unihalle.informatik.Alida.dataio.provider
-
This is the interface for Alida's dataIO provider from command line.
- ALDDataIOException - Exception in de.unihalle.informatik.Alida.exceptions
-
Exception thrown in data IO contexts.
- ALDDataIOException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOException
-
- ALDDataIOManager - Class in de.unihalle.informatik.Alida.dataio
-
Class to manage data input and output in Alida.
- ALDDataIOManager() - Constructor for class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
-
Default constructor.
- ALDDataIOManagerCmdline - Class in de.unihalle.informatik.Alida.dataio
-
This class implements a DataIO manager for reading/writing from command line.
- ALDDataIOManagerException - Exception in de.unihalle.informatik.Alida.exceptions
-
Alida exception thrown by data IO managers.
- ALDDataIOManagerException(ALDDataIOManagerException.ALDDataIOManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException
-
Constructor.
- ALDDataIOManagerException.ALDDataIOManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible exception types.
- ALDDataIOManagerSwing - Class in de.unihalle.informatik.Alida.dataio
-
This class implements a DataIO mangager for reading/writing from a graphical
user interface.
- ALDDataIOManagerSwing.ProviderInteractionLevel - Enum in de.unihalle.informatik.Alida.dataio
-
Levels to enable/disable interactive provider behaviour.
- ALDDataIOManagerXmlbeans - Class in de.unihalle.informatik.Alida.dataio
-
This class implements a DataIO manager for reading/writing from xml using xmlbeans.
- ALDDataIOProvider - Annotation Type in de.unihalle.informatik.Alida.annotations
-
Annotation for classes acting as Alida data I/O provider and
implementing the ALDDataIO interface.
- ALDDataIOProviderException - Exception in de.unihalle.informatik.Alida.exceptions
-
Alida exception thrown by data IO providers.
- ALDDataIOProviderException(ALDDataIOProviderException.ALDDataIOProviderExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException
-
Constructor.
- ALDDataIOProviderException.ALDDataIOProviderExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible exception types.
- ALDDataIOSwing - Interface in de.unihalle.informatik.Alida.dataio.provider
-
Interface for Alida's automatic data I/O via GUIs based on Swing.
- ALDDataIOXmlbeans - Interface in de.unihalle.informatik.Alida.dataio.provider
-
This is the interface for Alida's dataIO provider from xml using xmlbeans.
- ALDDataPort - Class in de.unihalle.informatik.Alida.operator
-
A data port acts as the reference for a data object in the processing history.
- ALDDataPort(Object) - Constructor for class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Create a data port for an object.
- ALDDemoOpControllable - Class in de.unihalle.informatik.Alida.demo
-
Controllable demo operator for testing interaction.
- ALDDemoOpControllable() - Constructor for class de.unihalle.informatik.Alida.demo.ALDDemoOpControllable
-
Default constructor.
- ALDDerivedClass - Annotation Type in de.unihalle.informatik.Alida.annotations
-
Each Class annotated with this annotation will enable Alida's DataIO mechanism to
find the class as extending another class.
- ALDDirectoryString - Class in de.unihalle.informatik.Alida.datatypes
-
Class for representing a directory path.
- ALDDirectoryString(String) - Constructor for class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString
-
Default constructor.
- ALDEdge - Class in de.unihalle.informatik.Alida.operator
-
This class is used to represent edges of the processing history during
construction of the explicit history graph.
- ALDEnumDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
-
DataIO provider for enumerations from command line.
- ALDEnumDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
-
- ALDEnumDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Class for generic loading/saving of enumerations via GUI in Alida.
- ALDEnumDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
-
- ALDEnumDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
-
DataIO provider for enumerations xml using xmlbeans.
- ALDEnumDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
-
- ALDEnvironmentConfig - Class in de.unihalle.informatik.Alida.helpers
-
Helper class to access environment variables and properties.
- ALDEnvironmentConfig() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
-
- ALDEvent - Class in de.unihalle.informatik.Alida.operator.events
-
Super class for all events used in `Alida`.
- ALDEvent(Object) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDEvent
-
Default constructor for events.
- ALDEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDEvent
-
Default constructor for events with messages.
- ALDException - Exception in de.unihalle.informatik.Alida.exceptions
-
Abstract main class for exceptions in Alida.
- ALDException() - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDException
-
- ALDFileDirectoryDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
-
DataIO provider for filenames and directory paths from command line.
- ALDFileDirectoryDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
-
- ALDFileDirectoryDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Class for loading/saving file and directory paths via GUI.
- ALDFileDirectoryDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
-
- ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
GUI panel for IO of file and directory names.
- ALDFileDirectoryDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
-
DataIO provider for filenames and directory paths xml using xmlbeans.
- ALDFileDirectoryDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
-
- ALDFilePathManipulator - Class in de.unihalle.informatik.Alida.helpers
-
Class providing helpers to manipulate file and directory path names.
- ALDFilePathManipulator() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
-
- ALDFileString - Class in de.unihalle.informatik.Alida.datatypes
-
Class for representing a file path.
- ALDFileString(String) - Constructor for class de.unihalle.informatik.Alida.datatypes.ALDFileString
-
Default constructor with file name.
- ALDGrappaFrame - Class in de.unihalle.informatik.Alida.grappa
-
Main frame of Grappa graphical editor for Alida.
- ALDGrappaFrame(Collection<ALDOperatorLocation>, Collection<ALDOperatorLocation>) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
-
Default constructor
- ALDGrappaFrame.ChooserTreeMouseAdapter - Class in de.unihalle.informatik.Alida.grappa
-
MouseListener for the operator tree.
- ALDGrappaLinkDataIOSwing - Class in de.unihalle.informatik.Alida.grappa
-
Graphical component to represent Grappa links in Alida config windows.
- ALDGrappaLinkDataIOSwing(String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
-
- ALDGrappaLinkDataIOSwing.GrappaLinkTextField - Class in de.unihalle.informatik.Alida.grappa
-
- ALDGrappaMenuBar - Class in de.unihalle.informatik.Alida.grappa
-
Menu bar for Grappa window.
- ALDGrappaMenuBar(ALDGrappaFrame, ALDOperatorChooserTree, ALDGrappaWorkbench) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
Default constructor
- ALDGrappaNodeInfo - Class in de.unihalle.informatik.Alida.grappa
-
Serializable object attached to nodes in Grappa to store meta information.
- ALDGrappaNodeInfo() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
-
Default constructor.
- ALDGrappaNodeInfo(String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
-
Constructor with predefined name.
- ALDGrappaNodeInfo(String, Integer) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
-
Operator with predefined name and ID.
- ALDGrappaNodePortInfo - Class in de.unihalle.informatik.Alida.grappa
-
Serializable object attached to node ports to store meta information.
- ALDGrappaNodePortInfo(mxCell, ALDOpParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
Default constructor.
- ALDGrappaNodePortInfo() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- ALDGrappaRunner - Class in de.unihalle.informatik.Alida.tools
-
Main class for invoking Grappa from commandline in Alida context.
- ALDGrappaRunner() - Constructor for class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
-
- ALDGrappaWorkbench - Class in de.unihalle.informatik.Alida.grappa
-
Main frame of Grappa.
- ALDGrappaWorkbench(ALDGrappaFrame) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Default constructor
- ALDGrappaWorkbenchGraph - Class in de.unihalle.informatik.Alida.grappa
-
Graph class augmented for Grappa workflows.
- ALDGrappaWorkbenchGraph() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph
-
- ALDGrappaWorkbenchTab - Class in de.unihalle.informatik.Alida.grappa
-
Grappa workflow graph component.
- ALDGrappaWorkbenchTab(ALDGrappaWorkbench, ALDGrappaWorkbenchGraph) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Default constructor.
- ALDGrappaWorkbenchTab(ALDGrappaWorkbench, mxGraph, ALDWorkflow) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Constructor to setup tab from given (reloaded) workflow.
- ALDGrappaWorkbenchTab.ContextMenuGraph - Class in de.unihalle.informatik.Alida.grappa
-
Context menu for whole workbench.
- ALDGrappaWorkbenchTab.ContextMenuNodeEdge - Class in de.unihalle.informatik.Alida.grappa
-
Context menu of nodes.
- ALDGrappaWorkbenchTab.GraphEventListener - Class in de.unihalle.informatik.Alida.grappa
-
Event handler for mxGraph events.
- ALDGrappaWorkbenchTab.GraphKeyListener - Class in de.unihalle.informatik.Alida.grappa
-
- ALDGrappaWorkbenchTab.GraphMouseAdapter - Class in de.unihalle.informatik.Alida.grappa
-
MouseListener for the workbench.
- ALDGrappaWorkbenchTab.ParameterChangeListener - Class in de.unihalle.informatik.Alida.grappa
-
- ALDGrappaWorkbenchTab.WorkflowModifyAction - Class in de.unihalle.informatik.Alida.grappa
-
- ALDGrappaWorkflowTabChangeEvent - Class in de.unihalle.informatik.Alida.grappa
-
Event data type to handle events happening in Grappa workflow tabs.
- ALDGrappaWorkflowTabChangeEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent
-
Default constructor for events with messages.
- ALDInputPort - Class in de.unihalle.informatik.Alida.operator
-
Input port within an opNode.
- ALDInputPort(ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDInputPort
-
Construct an input port within the given opNode with index idx and
descriptorName as role of the port.
- ALDKmeansOp - Class in de.unihalle.informatik.Alida.demo
-
Demo operator clustering experimental data using k-means.
- ALDKmeansOp() - Constructor for class de.unihalle.informatik.Alida.demo.ALDKmeansOp
-
Default constructor.
- ALDKmeansOp(ExperimentalData) - Constructor for class de.unihalle.informatik.Alida.demo.ALDKmeansOp
-
Constructor.
- ALDNativeArray1DDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Class for generic loading/saving of 1D-arrays from/to GUI in Alida.
- ALDNativeArray1DDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
-
Default constructor.
- ALDNativeArray2DDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Class for generic loading/saving of 2D-arrays from/to GUI in Alida.
- ALDNativeArray2DDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
-
Default constructor.
- ALDNativeDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
-
DataIO provider for primitive datatypes, Java wrapper types, and arrays (1D and 2D) from comamand line.
- ALDNativeDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
-
- ALDNativeDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Class for loading/saving primitive datatypes in Alida.
- ALDNativeDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
-
- ALDNativeDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
-
DataIO provider for primitive datatypes, Java wrapper types, and arrays (1D and 2D) xml using xmlbeans.
- ALDNativeDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
-
- ALDNumberConverter - Class in de.unihalle.informatik.Alida.dataconverter
-
Converts numbers.
- ALDNumberConverter() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
-
Default constructor.
- ALDOperator - Class in de.unihalle.informatik.Alida.operator
-
This is the abstract super class for all Alida operators.
- ALDOperator() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperator
-
This constructor initializes an operator.
- ALDOperator.HidingMode - Enum in de.unihalle.informatik.Alida.operator
-
Determines the visibility of an operator invocation via runOp() in
the processing history.
- ALDOperatorChooserTree - Class in de.unihalle.informatik.Alida.gui
-
This class extends JTree to hold ALDOperators to choose from.
- ALDOperatorChooserTree(Collection<ALDOperatorLocation>, Collection<ALDOperatorLocation>) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
Constructor.
- ALDOperatorChooserTreeNode - Class in de.unihalle.informatik.Alida.gui
-
Class for managing nodes of the tree view.
- ALDOperatorConfigurationFrame - Class in de.unihalle.informatik.Alida.gui
-
Frame to configure an operator.
- ALDOperatorConfigurationFrame(ALDOperator) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Constructs a control frame for an operator object.
- ALDOperatorControlFrame - Class in de.unihalle.informatik.Alida.gui
-
Frame to configure and run an operator.
- ALDOperatorControlFrame(ALDOperator, ALDOperatorGUIExecutionProxy) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Constructs a new control frame for an operator object.
- ALDOperatorControllable - Class in de.unihalle.informatik.Alida.operator
-
Operator class with inherent event handling for execution control.
- ALDOperatorControllable() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
Default constructor.
- ALDOperatorControllable.OperatorControlStatus - Enum in de.unihalle.informatik.Alida.operator
-
Control command and/or operator status, respectively.
- ALDOperatorDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Data IO provider for operators in GUI.
- ALDOperatorDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
-
Default constructor.
- ALDOperatorDataIOSwing.OperatorConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Configuration window for operator.
- ALDOperatorException - Exception in de.unihalle.informatik.Alida.exceptions
-
Exception mainly thrown by
ALDOperator
in case of failures.
- ALDOperatorException(ALDOperatorException.OperatorExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException
-
Constructor.
- ALDOperatorException.OperatorExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible operator exception types.
- ALDOperatorExecutionProgressEvent - Class in de.unihalle.informatik.Alida.operator.events
-
Event type to reflect progress of operator execution.
- ALDOperatorExecutionProgressEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
-
Constructor with message.
- ALDOperatorExecutionProgressEvent(Object, String, ALDOperator) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
-
Constructor with message.
- ALDOperatorExecutionProgressEventListener - Interface in de.unihalle.informatik.Alida.operator.events
-
Listener interface for `Alida` progress of operator execution events.
- ALDOperatorGUIExecutionProxy - Class in de.unihalle.informatik.Alida.gui
-
Manager for executing single operator and workflow objects via GUI.
- ALDOperatorGUIExecutionProxy(ALDOperatorLocation) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Default constructor.
- ALDOperatorGUIExecutionProxy.ParameterChangeListener - Class in de.unihalle.informatik.Alida.gui
-
Listener class to react on parameter value changes in config window.
- ALDOperatorGUIExecutionProxy.WorkflowThreadStatus - Enum in de.unihalle.informatik.Alida.gui
-
Status of the associated thread to execute operator.
- ALDOperatorLocation - Class in de.unihalle.informatik.Alida.operator
-
- ALDOperatorLocation() - Constructor for class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
-
Default constructor, should never be called directly!
- ALDOperatorLocation.LocationType - Enum in de.unihalle.informatik.Alida.operator
-
- ALDOperatorLocationType - Interface in de.unihalle.informatik.Alida.operator
-
Describes different types of location from which an
ALDOperator may be instantiated.
- ALDOperatorParamDisplayFrame - Class in de.unihalle.informatik.Alida.gui
-
Frame to display the operator configuration used to calculate results.
- ALDOperatorParamDisplayFrame(ALDOperator, ALDDataIOManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorParamDisplayFrame
-
Constructor.
- ALDOperatorParameterPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Panel to hold graphical elements for configuring an operator.
- ALDOperatorParameterPanel(ALDOperator, Parameter.ExpertMode, boolean, ALDSwingValueChangeListener) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Default constructor.
- ALDOperatorResultFrame - Class in de.unihalle.informatik.Alida.gui
-
Frame with result data displayed on termination of an operator run.
- ALDOperatorResultFrame(ALDOperator, ALDDataIOManagerSwing.ProviderInteractionLevel) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
-
Constructor.
- ALDOpNode - Class in de.unihalle.informatik.Alida.operator
-
Each instance of this class represents an operator invocation for the
implicit processing graph.
- ALDOpNode(ALDOperator, ALDOperator.HidingMode) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Construct an ALDOpNode for the operator op and hidingMode
- ALDOpNodePort - Class in de.unihalle.informatik.Alida.operator
-
Abstract class for ports residing within opNodes.
- ALDOpNodePort(String, ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Create a port for an opNode with given index within this opNode and type.
- ALDOpParameterChangeEvent - Class in de.unihalle.informatik.Alida.operator.events
-
Event type to configure operator execution.
- ALDOpParameterChangeEvent(Object) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Constructor.
- ALDOpParameterChangeEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Constructor with message.
- ALDOpParameterChangeEventListener - Interface in de.unihalle.informatik.Alida.operator.events
-
Listener interface for `Alida` configuration events.
- ALDOpParameterDescriptor - Class in de.unihalle.informatik.Alida.operator
-
This class describes the parameters of an operator.
- ALDOpParameterDescriptor(String, Parameter.Direction, Boolean, Class<?>, String, String, boolean, Object, Field, int, Parameter.ExpertMode) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
Construct a descriptor
- ALDOpRunner - Class in de.unihalle.informatik.Alida.tools
-
Generic commandline interface to run an Alida operator.
- ALDOpRunner(String[]) - Constructor for class de.unihalle.informatik.Alida.tools.ALDOpRunner
-
Construct a ALDOpRunner using args
- ALDOpRunnerGUI - Class in de.unihalle.informatik.Alida.tools
-
Generic graphical user interface to run Alida operators.
- ALDOpRunnerGUI() - Constructor for class de.unihalle.informatik.Alida.tools.ALDOpRunnerGUI
-
- ALDOutputPort - Class in de.unihalle.informatik.Alida.operator
-
Output port within an opNode.
- ALDOutputPort(ALDOpNode, int, String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDOutputPort
-
Construct an output port within the given opNode with index idx and
descriptorName as role of the port.
- ALDParameterDescriptor - Class in de.unihalle.informatik.Alida.operator
-
This class describes generic parameters in Alida used, e.g., in paramterized
classes and operators.
- ALDParameterDescriptor(String, Class<?>, String, String, boolean, Object, Field, int, Parameter.ExpertMode) - Constructor for class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Constructor.
- ALDParameterPanel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Class for configuring sets of parameters via GUI in Alida.
- ALDParameterPanel(LinkedList<? extends ALDParameterDescriptor>, String, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Default constructor.
- ALDParameterPanel(LinkedList<? extends ALDParameterDescriptor>, String, boolean, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Constructor.
- ALDParameterTester - Class in de.unihalle.informatik.Alida.demo
-
Dummy operator class for demo and testing of input parameter types.
- ALDParameterTester() - Constructor for class de.unihalle.informatik.Alida.demo.ALDParameterTester
-
Default constructor.
- ALDParametrizedClass - Annotation Type in de.unihalle.informatik.Alida.annotations
-
Classes annotated by this annotation are handle by Alida's DataIO.
- ALDParametrizedClassConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Configuration window for parametrized class objects.
- ALDParametrizedClassConfigWindow(Class<?>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Default constructor.
- ALDParametrizedClassConfigWindow(Object) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Default constructor.
- ALDParametrizedClassConfigWindow(Object, boolean) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Default constructor.
- ALDParametrizedClassDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
-
DataIO provider for parametrized classes and operators from command line.
- ALDParametrizedClassDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
-
- ALDParametrizedClassDataIOHelper - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
-
Helper class to configure and handle parametrized class objects.
- ALDParametrizedClassDataIOHelper() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
-
- ALDParametrizedClassDataIOSwing - Class in de.unihalle.informatik.Alida.dataio.provider.swing
-
Class for generic handling of parameterized classes in GUI.
- ALDParametrizedClassDataIOSwing() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
-
Default constructor.
- ALDParametrizedClassDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
-
DataIO provider for parametrized classes and operators from command line.
- ALDParametrizedClassDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDParametrizedClassDataIOXmlbeans
-
- ALDParametrizedClassDummy - Class in de.unihalle.informatik.Alida.dataio.provider.helpers
-
This class only serves as a proxy for Alida's dataIO system to look up DataIO providers
for parametrized classes.
- ALDParametrizedClassDummy() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDummy
-
- ALDParser - Class in de.unihalle.informatik.Alida.helpers
-
Helper class for parsing/formatting objects for data I/O in Alida.
- ALDParser() - Constructor for class de.unihalle.informatik.Alida.helpers.ALDParser
-
- ALDPCAOp - Class in de.unihalle.informatik.Alida.demo
-
Demo operator computing the PCA for experimental data.
- ALDPCAOp() - Constructor for class de.unihalle.informatik.Alida.demo.ALDPCAOp
-
Default constructor.
- ALDPCAOp(ExperimentalData) - Constructor for class de.unihalle.informatik.Alida.demo.ALDPCAOp
-
Constructor.
- ALDPort - Class in de.unihalle.informatik.Alida.operator
-
This is the abstract super class of all ports which
act as proxies to receive or supply objects within a processing graph.
- ALDPort(String) - Constructor for class de.unihalle.informatik.Alida.operator.ALDPort
-
Construct a port object
- ALDPortHashAccess - Class in de.unihalle.informatik.Alida.operator
-
Interface to the port hash map of Alida.
- ALDPortHashAccess() - Constructor for class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
-
Constructor without function.
- ALDProcessingDAG - Class in de.unihalle.informatik.Alida.operator
-
This class handles the construction of a processing DAG from opNode instances
and writing this processing history as extended graphml to file.
- ALDProcessingDAG() - Constructor for class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
-
- ALDProcessingDAG.HistoryType - Enum in de.unihalle.informatik.Alida.operator
-
Type of the processing history to be generated.
- ALDProcessingDAGException - Exception in de.unihalle.informatik.Alida.exceptions
-
Exception thrown in context of history graph reconstruction.
- ALDProcessingDAGException(ALDProcessingDAGException.DAGExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
-
Constructor.
- ALDProcessingDAGException.DAGExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible graph exception types.
- ALDProviderManagerException - Exception in de.unihalle.informatik.Alida.exceptions
-
Alida exception thrown by batch I/O managers.
- ALDProviderManagerException(ALDProviderManagerException.ALDProviderManagerExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException
-
Constructor.
- ALDProviderManagerException.ALDConverterManagerException - Class in de.unihalle.informatik.Alida.exceptions
-
- ALDProviderManagerException.ALDProviderManagerExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
Possible exception types.
- ALDSourceTargetClassPair(Class<?>, Class<?>) - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
-
- ALDStandardizedDataIOCmdline - Class in de.unihalle.informatik.Alida.dataio.provider.cmdline
-
Abstract class providing basic methods for cmdline DataIO providers
according to Alida conventions.
- ALDStandardizedDataIOCmdline() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
-
- ALDStandardizedDataIOXmlbeans - Class in de.unihalle.informatik.Alida.dataio.provider.xmlbeans
-
Abstract class providing basic methods for xml DataIO using xmlbeans
according to Alida conventions.
- ALDStandardizedDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
-
- ALDSummarizeArrayOp - Class in de.unihalle.informatik.Alida.demo
-
A abstract summarizing operator taking a 1D array as input and
return a summarizing scalar.
- ALDSummarizeArrayOp() - Constructor for class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
-
Default constructor.
- ALDSummarizerNativeArray1DSwing - Class in de.unihalle.informatik.Alida.batch.provider.output.swing
-
- ALDSummarizerNativeArray1DSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing
-
Default constructor.
- ALDSummarizerNativeDataSwing - Class in de.unihalle.informatik.Alida.batch.provider.output.swing
-
- ALDSummarizerNativeDataSwing() - Constructor for class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeDataSwing
-
- ALDSwingComponent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Class defining Alida-specific Swing GUI components.
- ALDSwingComponent() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
-
- ALDSwingComponentCheckBox - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Alida-specific Swing component linked to a
JCheckBox.
- ALDSwingComponentCheckBox() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
-
Default constructor.
- ALDSwingComponentComboBox - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Alida-specific Swing component linked to a
JComboBox.
- ALDSwingComponentComboBox(Vector<ALDSwingComponentComboBoxItem>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
-
Default constructor.
- ALDSwingComponentComboBox.ComboBoxTooltipRenderer - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Tooltip renderer class, adds a tooltip to each item in the combobox.
- ALDSwingComponentComboBoxItem - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
- ALDSwingComponentComboBoxItem(Object, String, String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
-
Default constructor.
- ALDSwingComponentLabel - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Alida-specific Swing component linked to a
JLabel.
- ALDSwingComponentLabel(String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
-
Default constructor.
- ALDSwingComponentTextField - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Alida-specific Swing component linked to a
JTextField.
- ALDSwingComponentTextField(Class<?>, int) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
Default constructor.
- ALDSwingValueChangeEvent - Class in de.unihalle.informatik.Alida.dataio.provider.swing.events
-
Event type for reporting changes of values in provider GUI elements.
- ALDSwingValueChangeEvent(Object) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent
-
Default constructor.
- ALDSwingValueChangeEvent(Object, String) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeEvent
-
Default constructor with arguments.
- ALDSwingValueChangeListener - Interface in de.unihalle.informatik.Alida.dataio.provider.swing.events
-
Listener interface for change value events reported by provider GUI elements.
- ALDSwingValueChangeReporter - Class in de.unihalle.informatik.Alida.dataio.provider.swing.events
-
Reporter interface for change value events in Alida Swing GUI components.
- ALDSwingValueChangeReporter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
-
- ALDTableWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
GUI window for displaying tables in Alida.
- ALDTableWindow(DefaultTableModel) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Default constructor.
- ALDTableWindow(DefaultTableModel, Object) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Default constructor.
- ALDTableWindow.DataTabFileFilter - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Internal class that realizes a FileFilter for text
files where MiToBo table data is stored.
- ALDTableWindow.TableConfigWindow - Class in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Window class for configuring the table appearance and export.
- ALDTableWindow.TableModelDelimiter - Enum in de.unihalle.informatik.Alida.dataio.provider.swing.components
-
Delimiters available when writing a model to a string or file.
- ALDTransposeMatrix - Class in de.unihalle.informatik.Alida.demo
-
Operator for transposing matrices.
- ALDTransposeMatrix() - Constructor for class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
-
Default constructor.
- ALDTransposeMatrix(int[][]) - Constructor for class de.unihalle.informatik.Alida.demo.ALDTransposeMatrix
-
Constructor.
- ALDVectorNativeArrayConverter - Class in de.unihalle.informatik.Alida.dataconverter
-
Converts 1D arrays of native data types to
Vector data types.
- ALDVectorNativeArrayConverter() - Constructor for class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
-
Default constructor.
- ALDVersionProvider - Class in de.unihalle.informatik.Alida.version
-
Info class providing version information for auto-documentation.
- ALDVersionProvider() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProvider
-
- ALDVersionProviderCmdLine - Class in de.unihalle.informatik.Alida.version
-
Info class providing version information parsed from commandline.
- ALDVersionProviderCmdLine() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderCmdLine
-
- ALDVersionProviderDummy - Class in de.unihalle.informatik.Alida.version
-
Dummy version info class always returning "unknown" as version.
- ALDVersionProviderDummy() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderDummy
-
- ALDVersionProviderFactory - Class in de.unihalle.informatik.Alida.version
-
Factory for dynamic instantiation of version providers at runtime.
- ALDVersionProviderFactory() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
-
- ALDVersionProviderGit - Class in de.unihalle.informatik.Alida.version
-
Version provider to extract version information from local Git repository.
- ALDVersionProviderGit() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
-
- ALDVersionProviderReleaseJar - Class in de.unihalle.informatik.Alida.version
-
Info class which provides Alida operators with version information from
a version file distributed with the release jar archive.
- ALDVersionProviderReleaseJar() - Constructor for class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
-
- ALDWorkflow - Class in de.unihalle.informatik.Alida.workflows
-
Class to model a workflow in Alida.
- ALDWorkflow(String) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Constructor for a workflow in a grappa context.
- ALDWorkflow(String, ALDWorkflow.ALDWorkflowContextType) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Constructor
- ALDWorkflow() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Constructor for an untitled workflow in a grappa context.
- ALDWorkflow(ALDWorkflow.ALDWorkflowContextType) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Constructor for an untitled workflow
- ALDWorkflow.ALDWorkflowContextType - Enum in de.unihalle.informatik.Alida.workflows
-
workflow context types.
- ALDWorkflowClassEvent - Class in de.unihalle.informatik.Alida.workflows.events
-
Event type related to Alida work flows.
- ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
-
Constructor.
- ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
-
Constructor.
- ALDWorkflowClassEvent(Object, ALDWorkflowClassEvent.ALDWorkflowClassEventType, String, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
-
Constructor.
- ALDWorkflowClassEvent.ALDWorkflowClassEventType - Enum in de.unihalle.informatik.Alida.workflows.events
-
Types of events.
- ALDWorkflowClassEventListener - Interface in de.unihalle.informatik.Alida.workflows.events
-
Listener interface for `Alida` workflow events.
- ALDWorkflowDataIOXmlbeans - Class in de.unihalle.informatik.Alida.workflows
-
DataIO provider for ALDWorkflow from xml using xmlbeans.
- ALDWorkflowDataIOXmlbeans() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
-
- ALDWorkflowEdge - Class in de.unihalle.informatik.Alida.workflows
-
This class represents an edge within an work flow.
- ALDWorkflowEdge(ALDWorkflowNode, String, ALDWorkflowNode, String) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Create an edge with the given source and target.
- ALDWorkflowEdgeID - Class in de.unihalle.informatik.Alida.workflows
-
Class to index a work flow edge
- ALDWorkflowEvent - Class in de.unihalle.informatik.Alida.workflows.events
-
Event type related to Alida work flows.
- ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Constructor.
- ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Constructor.
- ALDWorkflowEvent(Object, ALDWorkflowEvent.ALDWorkflowEventType, String, Object) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Constructor.
- ALDWorkflowEvent(ALDWorkflowEvent) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Constructor.
- ALDWorkflowEvent.ALDWorkflowEventType - Enum in de.unihalle.informatik.Alida.workflows.events
-
Types of events.
- ALDWorkflowEventListener - Interface in de.unihalle.informatik.Alida.workflows.events
-
Listener interface for `Alida` workflow events.
- ALDWorkflowEventReporter - Interface in de.unihalle.informatik.Alida.workflows.events
-
- ALDWorkflowException - Exception in de.unihalle.informatik.Alida.exceptions
-
Exception mainly thrown by
de.unihalle.informatik.Alida.workflow.ALDWorkflow
in case of failures.
- ALDWorkflowException(ALDWorkflowException.WorkflowExceptionType, String) - Constructor for exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
-
Constructor.
- ALDWorkflowException.WorkflowExceptionType - Enum in de.unihalle.informatik.Alida.exceptions
-
- ALDWorkflowHelper - Class in de.unihalle.informatik.Alida.workflows
-
- ALDWorkflowHelper() - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowHelper
-
- ALDWorkflowID - Class in de.unihalle.informatik.Alida.workflows
-
Class to index a work flow object.
- ALDWorkflowID(Integer) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowID
-
Create an id object.
- ALDWorkflowNode - Class in de.unihalle.informatik.Alida.workflows
-
This class represents a node in an Alida work flow.
- ALDWorkflowNode(ALDWorkflow, ALDOperator) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Create a node
- ALDWorkflowNode(ALDWorkflow, ALDOperator, boolean) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Create a node
- ALDWorkflowNode.ALDWorkflowNodeState - Enum in de.unihalle.informatik.Alida.workflows
-
- ALDWorkflowNodeID - Class in de.unihalle.informatik.Alida.workflows
-
Class to index a work flow node.
- ALDWorkflowParameterDescriptor - Class in de.unihalle.informatik.Alida.workflows
-
Extends the classALDOpParameterDescriptor to hold the value
of a parameter.
- ALDWorkflowParameterDescriptor(ALDOpParameterDescriptor) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowParameterDescriptor
-
- ALDWorkflowParameterDescriptor(String, Parameter.Direction, Boolean, Class<?>, String, String, boolean, Object, Field, int, Parameter.ExpertMode) - Constructor for class de.unihalle.informatik.Alida.workflows.ALDWorkflowParameterDescriptor
-
- ALDWorkflowRunFailureInfo - Class in de.unihalle.informatik.Alida.workflows.events
-
This class holds information related to a run failure event
- ALDWorkflowRunFailureInfo(Exception, ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
-
- ALDWorkflowRunFailureInfo(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
-
- ALDWorkflowStorageInfo - Class in de.unihalle.informatik.Alida.workflows.events
-
- ALDWorkflowStorageInfo(String, ALDWorkflow) - Constructor for class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
-
- alidaWorkflow - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Reference to the underlying Alida workflow object.
- alidaWorkflow - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Reference to the underlying Alida workflow object.
- applicationTreeModel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
Tree of available operators for standard level.
- ApplyToMatrix - Class in de.unihalle.informatik.Alida.demo
-
Demo operator to apply a summarizing operation to a 2D array in row or column wise fashion.
- ApplyToMatrix() - Constructor for class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Default constructor.
- ApplyToMatrix(Double[][]) - Constructor for class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Constructor.
- ApplyToMatrix.SummarizeMode - Enum in de.unihalle.informatik.Alida.demo
-
Choose row or colum wise sum
- arrayToString(Object) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
-
Formats an array according to Alida data I/O conventions.
- capacity() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Returns the number of slots in this table.
- changePanel(ALDParameterDescriptor, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Deprecated.
- changeViewMode(Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Switches view mode of the panel.
- changeViewMode(Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Changes the view mode.
- checkValue() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
Method that handles events triggered by the text field.
- ChooserTreeMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame.ChooserTreeMouseAdapter
-
- clear() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Removes all mappings from the map.
- clearTreeSelection() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- clone() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Returns a shallow copy of this ConcurrentReaderHashMap instance.
- clone() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
Clone an instance
- clone() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Clones an instance.
- cloneProperties() - Method in class de.unihalle.informatik.Alida.operator.ALDData
-
Clone the property hash of this obejct.
- closeWindow() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Closes the GUI table window.
- ComboBoxTooltipRenderer(Vector<ALDSwingComponentComboBoxItem>) - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer
-
Default constructor.
- comment - Variable in exception de.unihalle.informatik.Alida.exceptions.ALDException
-
Exception comment.
- compareTo(ALDSwingComponentComboBoxItem) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
-
- compCheckBox - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
-
Associated Swing component.
- compComboBox - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
-
Associated Swing component.
- compLabel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
-
Associated Swing component.
- completeDAG - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Does this operator prefer a complete DAG or a data dependency DAG.
- compTextField - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
Associated Swing component.
- configurationEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
List of configuration event listeners attached to this reporter.
- configureCollectionApplicationOps() - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
-
Configure collection of operators belonging to the application set.
- configureCollectionStandardOps() - Static method in class de.unihalle.informatik.Alida.tools.ALDGrappaRunner
-
Configure collection of operators belonging to the standard set.
- configureWorkflow(ALDConfigurationEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- configWindows - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Map of node cells and their corresponding configuration windows.
- containsKey(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Tests if the specified object is a key in this table.
- ContextMenuGraph() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuGraph
-
- ContextMenuNodeEdge(int, int) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ContextMenuNodeEdge
-
- controlEventlistenerList - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
List of control event listeners attached to this reporter.
- controlWin - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Corresponding configuration and control window.
- convert(Object, Type[], Class<?>, Type[]) - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter
-
Convert the sourceObject into an object of class
targetClass.
- convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
Convert the sourceObject into an object of class
targetClass.
- convert(ALDDataConverter, Object, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
Convert the sourceObject into an object of class
targetClass.
- convert(Object, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
- convert(Object, Class<?>) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
Convert the sourceObject into an object of class
targetClass.
- convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
-
- convert(Object, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
-
- copy(Field) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
- copyConfiguration(ALDOperatorParameterPanel) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
TODO Function should usually not be required...
- copyConfiguration(ALDParameterPanel) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
- copyNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Copy this node.
- copyWorkflowNodeLinksOnly(ALDOperator, mxCell, ALDOperator, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Copies only the links of a workflow node to a new node of same type.
- count - Variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
The total number of mappings in the hash table.
- createChildWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add a new workflow as a child to this workflow.
- createChildWorkflow(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add a new workflow as a child to this workflow.
- createClassLocation(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
-
Creates and returns a new location for an class extending ALDOperator.
- createCopy() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Create a clone of this event with the same time stamp
- createEdge(ALDWorkflowNodeID, String, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
This method calls createEdge with the argument allowDataConversion = false.
- createEdge(ALDWorkflowNodeID, String, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add an edge representing the data flow between the parameter
sourceParameterName in the operator represented by the node
with sourceNodeId
to the parameter targetParameterName in the operator represented by the node with
targetNodeId.
- createGraphmlDocument(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
-
Create the processing history for sourceObjOfHistory and convert to graphml object.
- createGraphmlDocument(Object, ALDProcessingDAG.HistoryType) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
-
Create the processing history for sourceObjOfHistory and convert to graphml object.
- createGraphmlDocument(Object, ALDProcessingDAG.HistoryType, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
-
Create the processing history for sourceObjOfHistory and convert to graphml object.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
-
Create a gui element which may be used to request the user to input data.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing
-
Interface method to create a GUI element for batch data input.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
-
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
-
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
-
Create a gui element which may be used to request the user to
input data of class cl.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing
-
Interface method to create a GUI element for data input.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
-
Generic reading of collections.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
-
Generate GUI element for generic reading of enumeration types.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
-
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
-
Generic reading of 1D arrays.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
-
Generic reading of 2D arrays.
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
-
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
-
- createGUIElement(Field, Class<?>, Object, ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
-
- createNewWorkflowEdge(mxCell, ALDWorkflowNodeID, ALDGrappaNodePortInfo, ALDWorkflowNodeID, ALDGrappaNodePortInfo) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Adds a new edge object to the graph.
- createNewWorkflowNode(ALDOperatorLocation, int, int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Creates a new workflow node.
- createNewWorkflowNode(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Creates a new workflow node.
- createNode(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add a new operator node to this workflow.
- createNode(ALDOperatorLocation) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add a new operator node to this workflow.
- createNode(ALDOperator) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Add a new operator to this workflow.
- createOperator() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
-
- createWorkflowFileLocation(String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
-
Creates and returns a new location for a file holding a work flow.
- data - Variable in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
-
Input 1D array
- dataIOObj - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing.GrappaLinkTextField
-
- dataIOOrder - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
- dataTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Data table (swing tables are nicer than imageJ tables).
- DataTabFileFilter() - Constructor for class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
-
- dataTabModel - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Reference object to the data.
- de.unihalle.informatik.Alida.annotations - package de.unihalle.informatik.Alida.annotations
-
Defines all annotations used within the Alida framework.
- de.unihalle.informatik.Alida.annotations.indexing - package de.unihalle.informatik.Alida.annotations.indexing
-
Contains helper classes related to annotation indexing in Alida.
- de.unihalle.informatik.Alida.batch - package de.unihalle.informatik.Alida.batch
-
Package containing classes for batch mode.
- de.unihalle.informatik.Alida.batch.provider.input - package de.unihalle.informatik.Alida.batch.provider.input
-
Package containing input providers for batch mode.
- de.unihalle.informatik.Alida.batch.provider.input.swing - package de.unihalle.informatik.Alida.batch.provider.input.swing
-
Package containing batch input providers for Swing GUIs.
- de.unihalle.informatik.Alida.batch.provider.output - package de.unihalle.informatik.Alida.batch.provider.output
-
Package containing output provider classes for batch mode.
- de.unihalle.informatik.Alida.batch.provider.output.swing - package de.unihalle.informatik.Alida.batch.provider.output.swing
-
Package containing batch output providers for Swing GUIs.
- de.unihalle.informatik.Alida.dataconverter - package de.unihalle.informatik.Alida.dataconverter
-
- de.unihalle.informatik.Alida.dataio - package de.unihalle.informatik.Alida.dataio
-
Package containing I/O related classes like managers and providers.
- de.unihalle.informatik.Alida.dataio.provider - package de.unihalle.informatik.Alida.dataio.provider
-
Package containing data I/O providers and helpers.
- de.unihalle.informatik.Alida.dataio.provider.cmdline - package de.unihalle.informatik.Alida.dataio.provider.cmdline
-
Package containing data I/O providers for commandline presenters.
- de.unihalle.informatik.Alida.dataio.provider.helpers - package de.unihalle.informatik.Alida.dataio.provider.helpers
-
Package containing data I/O provider helper classes.
- de.unihalle.informatik.Alida.dataio.provider.swing - package de.unihalle.informatik.Alida.dataio.provider.swing
-
Package containing data I/O providers for GUIs based on Java Swing.
- de.unihalle.informatik.Alida.dataio.provider.swing.components - package de.unihalle.informatik.Alida.dataio.provider.swing.components
-
- de.unihalle.informatik.Alida.dataio.provider.swing.events - package de.unihalle.informatik.Alida.dataio.provider.swing.events
-
- de.unihalle.informatik.Alida.dataio.provider.xmlbeans - package de.unihalle.informatik.Alida.dataio.provider.xmlbeans
-
Package containing data I/O providers for xmlbeans presenters.
- de.unihalle.informatik.Alida.datatypes - package de.unihalle.informatik.Alida.datatypes
-
Package containing data types defined by Alida.
- de.unihalle.informatik.Alida.demo - package de.unihalle.informatik.Alida.demo
-
Demonstrator package of how to implement and use Alida operators.
- de.unihalle.informatik.Alida.exceptions - package de.unihalle.informatik.Alida.exceptions
-
Defines Alida exceptions.
- de.unihalle.informatik.Alida.grappa - package de.unihalle.informatik.Alida.grappa
-
Contains all resources for the graphical programming editor Grappa.
- de.unihalle.informatik.Alida.gui - package de.unihalle.informatik.Alida.gui
-
Package containing GUI components for interactive operator selection/control.
- de.unihalle.informatik.Alida.helpers - package de.unihalle.informatik.Alida.helpers
-
Contains miscellaneous helper classes used in Alida.
- de.unihalle.informatik.Alida.operator - package de.unihalle.informatik.Alida.operator
-
Contains the core of Alida, i.e. the operator concept and processing graph stuff.
- de.unihalle.informatik.Alida.operator.events - package de.unihalle.informatik.Alida.operator.events
-
Definitions of Alida events and corresponding reporter and listener interfaces.
- de.unihalle.informatik.Alida.tools - package de.unihalle.informatik.Alida.tools
-
Tools for generic operator execution.
- de.unihalle.informatik.Alida.version - package de.unihalle.informatik.Alida.version
-
Classes for handling software version information.
- de.unihalle.informatik.Alida.workflows - package de.unihalle.informatik.Alida.workflows
-
Classes related to workflows in Alida.
- de.unihalle.informatik.Alida.workflows.events - package de.unihalle.informatik.Alida.workflows.events
-
Contains all events appearing in context of workflows in Alida.
- debug - Static variable in class de.unihalle.informatik.Alida.annotations.indexing.SezPozAdapter
-
For internal debugging purposes.
- debug - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
-
For internal debugging purposes only.
- debug - Static variable in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
-
For internal debugging purposes
- debug - Static variable in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
-
For internal debugging purposes
- debug - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
for debug message to stdout
- DEFAULT_INITIAL_CAPACITY - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
The default initial number of table slots for this table (32).
- DEFAULT_LOAD_FACTOR - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
The default load factor for this table (1.0).
- defaultValue - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
- delimButtonSpace - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
-
Button for selecting spaces as delimiters.
- delimButtonTab - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
-
Button for selecting tabs as delimiters.
- delimiter - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
-
Delimiter to be used for table export to file.
- DERIVEDCLASS_CHAR - Static variable in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
-
As a convention this character starts a derived class name,
and is terminated by ':'
- deserializeFromXmlFile(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Deserializes an operator state from the given file.
- direction - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
- dirPath - Variable in class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString
-
Name of directory including full path.
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
-
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
-
Disables the operator configuration panel.
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Disable component to prohibit value changes.
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
-
Method to disable the component, i.e. all graphical elements, to
prohibit parameter changes.
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
-
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
-
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
-
- disableComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
- disableComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
-
- disableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Disables all components in the different sub-panels.
- disableComponents() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Disables all components in this panel.
- disableStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Reset flag for step-wise execution.
- disableStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Reset flag for step-wise execution.
- displayFailureMessageWindow(ALDWorkflowEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Displays window with detailed error information on execution failures.
- displayMode - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
-
Mode for displaying parameters.
- displayMode - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Mode for displaying parameters.
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
-
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
-
Disposes all resources of this window and its sub-windows.
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Disposes all components in the different sub-panels.
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Disposes all components in this panel.
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Dispose component and all sub-windows.
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
-
Releases all resources, i.e. closes all sub-windows.
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
-
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
-
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
-
- dispose() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
- dispose() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
-
- dispose() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorResultFrame
-
- doNextBatchModeStep() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- doNextStepInWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- doStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Return flag for step-wise execution.
- doStepwiseExecution() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Return flag for step-wise execution.
- GenerateGetterSetter - Class in de.unihalle.informatik.Alida.tools
-
Generates code for getter/setter methods for an ALDOperator.
- GenerateGetterSetter() - Constructor for class de.unihalle.informatik.Alida.tools.GenerateGetterSetter
-
- generateHelpMenu() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
Function to setup the help menu.
- generateHelpMenu() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
Sets up the help menu.
- generateHelpMenu() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Sets up the help menu.
- get(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Returns the value to which the specified key is mapped in this table.
- getActionPositionX() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
-
- getActionPositionY() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
-
- getALDPortHashAccessKey() - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get a reference to the port hash access object.
- getAncestors() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return all ancestors of this node.
- getAnnotatedFields(Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
-
Return all fields for member variables of
myclass or any of its super classes
which is annotated with
ALDClassParameter.
- getBatchInputParameters() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Returns selected input parameters for batch mode.
- getBatchOutputParameters() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Returns selected output parameters for batch mode.
- getChildren() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get the all opNode children found during back tracing.
- getChildren() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return all children nodes of this node.
- getClassname() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Return the canonical classname of the ALDData associated with this port
- getClassName() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
-
Returns version provider class according to environment configuration.
- getClusters() - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
Get value of result.
- getClusters() - Method in class de.unihalle.informatik.Alida.demo.ALDKmeansOp
-
Get value of result.
- getCommentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
-
Returns comment string.
- getConfigValue(String, String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
-
Gets the value of a property from the environment.
- getConfigValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
-
Reads the value of the specified property from the environment.
- getConstructionMode() - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
- getConverter() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
- getData() - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
-
Returns the 1D array
- getData() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData
-
Return the data
- getDataIOOrder() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns data I/O order of parameter.
- getDebug() - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
-
Return the debug state
- getDefaultValue(Boolean, Boolean, ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Get the default for a paramter.
- getDefaultValue() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns default value of parameter.
- getDelimiterString() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
-
Returns the currently selected delimiter string.
- getDepth() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get depth.
- getDescendants() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return the nodeIds of all descendants of the given node.
- getDescription() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.DataTabFileFilter
-
- getDescription() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData
-
Get description.
- getDescriptorName() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Return the descriptor name of the port within its opNode
- getDirection() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
Returns parameter direction.
- getDirectlyRegisteredChildern() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get the all opNode children directly registered during invocation.
- getDirectoryName() - Method in class de.unihalle.informatik.Alida.datatypes.ALDDirectoryString
-
Returns current name of directory.
- getDoNormalize() - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
- getDoPCA() - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
- getEdge(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Get the workflow edge associated with edgeId.
- getEdge(ALDWorkflowNode, String, ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Get the workflow edge connecting given edges and parameters.
- getEdgeIdDuringLoading(Integer) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the edgeId of the idx-th edge according to the order of the edges
in the external representation resulting from (last) loading this workflow.
- getEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return a collection of all edges of this workflow
- getElapsedTime() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Get value of elapsedTime.
- getEnvVarValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
-
Reads the value of the specified property from environment variables.
- getEventMessage() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkflowTabChangeEvent
-
Returns individual message string.
- getEventMessage() - Method in class de.unihalle.informatik.Alida.operator.events.ALDEvent
-
Returns individual message string.
- getEventMessage(int) - Method in class de.unihalle.informatik.Alida.operator.events.ALDEvent
-
Returns individual message string formatted to a maximal line length.
- getEventQueue(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Returns the event queue associated with the listener or null
it the listener is not registered.
- getEventType() - Method in class de.unihalle.informatik.Alida.operator.events.ALDControlEvent
-
Returns type of event.
- getEventType() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
-
Returns type of event.
- getEventType() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Returns type of event.
- getException() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
-
- getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOException
-
Returns string characterising exception type.
- getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOException
-
Returns string characterising exception type.
- getExceptionID() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
-
Returns string characterising exception type.
- getExecutionProgressDescr() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
-
- getExperiment() - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
Get value of experiment.
- getExperiment() - Method in class de.unihalle.informatik.Alida.demo.ALDKmeansOp
-
Get value of experiment.
- getExperiment() - Method in class de.unihalle.informatik.Alida.demo.ALDPCAOp
-
Get value of experiment.
- getExperiment() - Method in class de.unihalle.informatik.Alida.demo.FilterExperimentalDataOp
-
Get value of experiment.
- getExperiment() - Method in class de.unihalle.informatik.Alida.demo.NormalizeExperimentalDataOp
-
Get value of experiment.
- getExplanation() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Return the explanation of the port copied from the argument descriptor
- getExplanation() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns explanation for parameter.
- getExtension(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
-
Gets extension from the filename, if any.
- getFeature(int) - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData
-
Return the i-th feature across all sub experiments.
- getField() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns a reference to the field of the parameter.
- getFileName() - Method in class de.unihalle.informatik.Alida.datatypes.ALDFileString
-
Returns current file name value.
- getFileName(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
-
Returns name without leading directories or file description (extension).
- getFilename() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
-
- getGraphmlHistory() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Get the grahphml history of this data port
- getHandlingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns mode of parameter handling.
- getHelpActionListener(Component, String, JFrame) - Static method in class de.unihalle.informatik.Alida.gui.OnlineHelpDisplayer
-
Get an ActionListener linked to the Alida online help system.
- getHidingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Return the hidingMode of this operator during execution
via runOp.
- getHidingMode() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get hiding mode of this opNode.
- getHistoryLink(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
-
Get the port to which the object is currently linked in history.
- getId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Return the id associated with this edge.
- getId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return the Id associated with this node.
- getId() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent
-
Returns the index of the even
- getId() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Returns the index of the even
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
-
Returns a (hopefully unique) identification string.
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException
-
- getIdentString() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
-
- getIdentStringWithoutType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
-
Returns the ident string in a user-friendly format without type info.
- getIncludedData() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get all included data ports found during back tracing.
- getInEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Returns all incoming edges.
- getInEdgesForParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return all incoming edges for this node which
have their target at parameterName.
- getInInoutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of in or inout parameters.
- getInInoutNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of in or inout parameters.
- getInNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of in parameters.
- getInOutNames(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of inout parameters.
- getInputParamIterator(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Returns an iterator for a specific input parameter in batch mode.
- getInputPort(int) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get input port with index i of this opNode.
- getInputPorts() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get all input ports of this opNode.
- getInstance() - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
-
Return the single instance of this class
- getInstance() - Static method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
-
Return the single instance of this class
- getInstance() - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
Return the single instance of this class
- getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
-
Return the single instance of this class
- getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
-
Return the single instance of this class
- getInstance() - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
-
Return the single instance of this class
- getItemText() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
-
Get textual representation of object.
- getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
-
- getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponent
-
Method to request the provider's GUI element.
- getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentCheckBox
-
- getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
-
- getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentLabel
-
- getJComponent() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
- getJComponent() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
-
- getJPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Get access to the main panel.
- getJPanel() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Method to access associated panel.
- getJVMPropValue(String, String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
-
Reads the value of the specified property from JVM properties.
- getJVMPropValue(String, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDEnvironmentConfig
-
Reads the value of specified property from JVM properties.
- getLabel() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns label for parameter.
- getLastSelectedPathComponent() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
- getLevel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
Return current mode of usage.
- getListCellRendererComponent(JList, Object, int, boolean, boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox.ComboBoxTooltipRenderer
-
- getLocation() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTreeNode
-
Get location object.
- getLocation() - Method in class de.unihalle.informatik.Alida.operator.ALDData
-
Get the location property, i.e. property with key location
- getLocation() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Get the location property, i.e. property with key location
- getMappingEdgeIdToInteger() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the current mapping of EdgeIds to integer ids.
- getMappingIntegerToEdgeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the current mapping of integer ids to EdgeIds.
- getMappingIntegerToNodeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the current mapping of integer ids to NodeIds.
- getMappingNodeIdToInteger() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the current mapping of NodeIds to integer ids.
- getMatrix() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Get value of matrix.
- getMessage() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDException
-
- getMissingRequiredInputs() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Deprecated.
- getMissingRequiredInputs(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Returns the names of all required input parameters of the operator object associated with the node
which are not linked and have a value of null.
- getMissingRequiredInputs() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Returns the names of all required input parameters of the operator object associated with the node
which are not linked and have a value of null
- getMyclass() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns class of parameter.
- getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the name of this operator
- getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
-
Returns the proper name of this location
- getName() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get the name of the operator represented by this opNode.
- getName() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Returns name of parameter.
- getNewConfigWin(ALDOperator) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Generate a new configuration window.
- getNewConfigWin(ALDOperator) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Generate a new configuration window.
- getNode() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- getNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Get the workflow node associated with nodeId.
- getNodeID() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowRunFailureInfo
-
- getNodeIdDuringLoading(Integer) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the nodeId of the idx-th node according to the order of the nodes
in the external representation resulting from (last) loading this workflow.
- getNodeName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
-
Returns name of node.
- getNodes() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return a collection of all nodes of this workflow
- getNodeStyleString(String) - Static method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Method to properly format node style string.
- getNormalizedExperiment() - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
- getNumCluster() - Method in class de.unihalle.informatik.Alida.demo.ALDKmeansOp
-
- getNumComponents() - Method in class de.unihalle.informatik.Alida.demo.ALDPCAOp
-
- getNumEntries() - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
-
Returns the number of objects currently stored in the history database.
- getNumExperiments() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData
-
Return number of sub experiments
- getNumFeatures() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData
-
Return number of features
- getNumParameters() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the number of parameters
- getObject() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
-
Get the object associated with this item.
- getOperator(String) - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
-
This method is called to instantiate the ALDOperator.
- getOperator(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Get the operator associated with nodeId.
- getOperator() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Returns the operator associated with this node.
- getOperatorClass() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get the class object of the operator represented by this opNode.
- getOperatorExecutionProgressDescr() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
- getOpNameFilter() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
- getOpNode() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Return the opNode of this port
- getOrigin() - Method in class de.unihalle.informatik.Alida.operator.ALDPort
-
Get the origin of this port, which is the parent
in the processing graph.
- getOriginatingOperator() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOperatorExecutionProgressEvent
-
- getOutEdges() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Returns all outgoing edges.
- getOutEdgesForParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return outgoing edges for this node which
have their source at parameterName.
- getOutInoutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of out or inout parameters
- getOutNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of out parameters
- getOutputPort(int) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get output port with index i of this opNode.
- getOutputPorts() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get all output ports of this opNode.
- getParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the value of a parameter specified by name.
- getParameter(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get value of parameter for given key.
- getParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- getParameterDescriptor(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the parameter descriptor for given name.
- getParameterHashAsXml() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get the parameter hash where values of parameters.
- getParameterKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get all keys of the parameter hash.
- getParameterNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of all parameters
- getParameterValueVec() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
-
Get a reference to the input parameter value vector.
- getParent() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get the parent opNode.
- getParents() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return all parents of this node.
- getParentWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
- getPartsOfName() - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorLocation
-
Return the parts of the name within a hierarchy,
e.g. package structure or package structure
- getPath(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
-
Get path.
- getPortClassName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
Returns the class name of the port/parameter datatype.
- getPortDirection() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
Returns the direction of the port/parameter.
- getPortExplanation() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
Returns the explanation of the port/parameter.
- getPortIndex() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Return the index of the port within its opNode
- getPortLabel() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
Returns the label of the port/parameter.
- getPortName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
Returns the name of the port/parameter.
- getProperties() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Return the properties associated with this port which have been retrieved
from the data as it passed the port.
- getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDData
-
Get a property value for the given key.
- getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Get a property value for the given key.
- getProperty(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort
-
Return property with key
- getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDData
-
Get the keys of all properties set in this data object
- getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Get the keys of all properties set in this data object
- getPropertyKeys() - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort
-
Return all keys of the property hash of this output port
- getProvider(Class<?>, Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
-
Method to return an instance of the batch input provider for given class.
- getProvider(Class<?>, Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
-
Method to return an instance of the batch output provider of the
requested class.
- getProvider(Class<?>, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
Method to return an instance of the data converter provider for given classes.
- getProvider(Class<?>, Field, Class<?>, Field) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
- getProvider(Class, Class) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
-
Method to return an instance of the DataIO provider class for the class cl
which implements the requested interface interfaceRequired
(which has itself to implement ALDDataIO).
- getProviderInstance() - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
-
Returns a reference to the currently selected provider object.
- getProviderInstance(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
-
Returns a reference to the provider object of the specified class.
- getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
-
Returns the current level of provider interaction.
- getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
-
Returns the current level of provider interaction.
- getProviderInteractionLevel() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
-
Returns the current level of provider interaction.
- getProviderMap() - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManager
-
Method to return a clone of the mapping of classes to dataIO providers.
- getRefID() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
-
Returns the reference ID of the node.
- getResult() - Method in class de.unihalle.informatik.Alida.demo.ALDPCAOp
-
Get value of result.
- getResult() - Method in class de.unihalle.informatik.Alida.demo.FilterExperimentalDataOp
-
Get value of result.
- getResult() - Method in class de.unihalle.informatik.Alida.demo.NormalizeExperimentalDataOp
-
Get value of result.
- getResultDataVec() - Method in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
-
Get a reference to the result data vector.
- getResultMean() - Method in class de.unihalle.informatik.Alida.demo.ALDCalcMeanArray
-
Returns the calculated mean value.
- getReturnElapsedTime() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Get value of returnElapsedTime.
- getShadowNodeId() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- getSourceClass() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
-
- getSourceNode() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Returns the source node.
- getSourceNodeId(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the NodeId of the source node of this edge
- getSourceParameterName(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the source parameter name of this edge
- getSourceParameterName() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Returns the parameter name of the source.
- getSourcePort() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
-
Return the source port of the edge.
- getState(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Get the state of node with nodeId.
- getState() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Returns the current state of this node
- getStepSize() - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Return desired step size.
- getStepSize() - Method in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Return desired step size.
- getSubExperiment(int) - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData
-
- getSummaries() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Get value of summaries.
- getSummarizeMode() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Get value of summarizeMode.
- getSummarizeOp() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Get value of summarizeOp.
- getSummary() - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
-
Returns the Summarizing scalar
- getSums() - Method in class de.unihalle.informatik.Alida.demo.MatrixSum
-
Returns the calculated sums.
- getSupplemental() - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
Returns if parameter is supplemental.
- getSupplementalNames() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the names of supplemental parameters
- getTableForReading() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Get ref to table; the reference and the cells it
accesses will be at least as fresh as from last
use of barrierLock
- getTargetClass() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
-
- getTargetNode() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Returns the target node.
- getTargetNodeId(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the NodeId of the target node of this edge
- getTargetParameterName(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Return the target parameter name of this edge
- getTargetParameterName() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Returns the parameter name of the target.
- getTargetPort() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
-
Return the target port of the edge.
- getText() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
Returns text of text field.
- getTimeStamp() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent
-
Returns the timestamp of this event.
- getTooltip() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBoxItem
-
Get tooltip text.
- getToolTipForCell(Object) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph
-
- getTooltipText(Object) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Function to return tooltip text for a cell.
- getToplevelGraph(GraphmlType) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
Return the first element of type Graph found at the top level of the
graphml object
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataConverterException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDOperatorException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException
-
Returns the type of this exception.
- getType() - Method in exception de.unihalle.informatik.Alida.exceptions.ALDWorkflowException
-
Returns the type of this exception.
- getValue(Field, Object) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
-
Return the value of the member variable associated with field in
the object obj.
- getValue() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowParameterDescriptor
-
- getVerbose() - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Get value of verbose.
- getVerbose() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Return the verbose state of this opertor.
- getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Get the version of this operator
- getVersion() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Get the software version.
- getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProvider
-
Returns the software version of currently running instance.
- getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderCmdLine
-
- getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderDummy
-
- getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderGit
-
- getVersion() - Method in class de.unihalle.informatik.Alida.version.ALDVersionProviderReleaseJar
-
- getWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.events.ALDWorkflowStorageInfo
-
- getWorkflowContext() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- getWorkflowName() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Returns name of currently active workflow.
- getWorkflowThreadStatus() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Returns current status of workflow thread.
- getWorkflowTitle() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Returns the workflow title.
- graphEdgeIDs - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Map of edge cells and their corresponding Alida workflow IDs.
- graphEdges - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Map of Alida workflow IDs and their corresponding edge cells.
- GraphEventListener() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphEventListener
-
- GraphKeyListener() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphKeyListener
-
- GraphmlHelper - Class in de.unihalle.informatik.Alida.operator
-
This class supplies some static auxiliary methods used when explicitly constructing
a history graph.
- GraphmlHelper() - Constructor for class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
- GraphMouseAdapter() - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.GraphMouseAdapter
-
- graphNodeIDs - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Map of node cells and their corresponding Alida workflow IDs.
- graphNodes - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Map of Alida workflow IDs and their corresponding node cells.
- GrappaLinkTextField(ALDGrappaLinkDataIOSwing) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing.GrappaLinkTextField
-
- grappaMainWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
Reference to main window of grappa.
- grappaMenu - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
-
Menubar.
- guiProxys - Variable in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
List of active GUI managers.
- paramChangeListener - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Listener object attached to the control window.
- Parameter - Annotation Type in de.unihalle.informatik.Alida.annotations
-
Annotation definition for operator parameters.
- Parameter.Direction - Enum in de.unihalle.informatik.Alida.annotations
-
Enumerates the different directions a parameter may, e.g. into or out of an operator.
- Parameter.ExpertMode - Enum in de.unihalle.informatik.Alida.annotations
-
Enumerates the different modes which are defined for a parameter to be
shown in automatically generated user interfaces.
- Parameter.Type - Enum in de.unihalle.informatik.Alida.annotations
-
Deprecated.
- ParameterChangeListener(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.ParameterChangeListener
-
- ParameterChangeListener(ALDWorkflowNodeID) - Constructor for class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.ParameterChangeListener
-
Default constructor.
- parameterName - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
-
Name of parameter over which was iterated.
- parametersToXmlObject() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Parse the parameter values to an XmlObject.
- parentFrame - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
- parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
-
Returns a collection instantiated from valueString.
- parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
-
- parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
-
Method to parse native data from a string.
- parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
-
Parser for parametrized classes and ALDOperators.
- parse(Field, Class<?>, String, ALDOperator) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
-
Generic Parser for parametrized classes and ALDOperators.
- parse(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
-
Returns an object instantiated from valueString.
- parseBracket(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
-
Parses a string for a matching bracket.
- parseBracket(String, char) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
-
Parses a string for a matching bracket.
- parseNameValuePairs(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
-
Parses a comma separated list of 'name=value' pairs into a hash map.
- pauseButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Pause button, changes its label.
- pauseWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- pLevel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Level of interaction providers are allowed to perform.
- popRecentlySelectedOperatorLocation() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
-
- popRecentlySelectedOperatorPath() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- portHashAccess - Static variable in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Access to the central port hash.
- postSystemStatusMessage(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
-
Post a new system status message to the log window.
- postWorkflowStatusMessage(String, String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
-
Post a new status message to the log window.
- print() - Method in class de.unihalle.informatik.Alida.demo.ExperimentalData
-
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDData
-
Print this data object to standard out
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Print some information to System.out.
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
-
Print this edge to stdout.
- print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDEdge
-
Print this edge to stdout with a given ident string.
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Print some information of the current state this operator to System.out.
- print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Print some information the current state of this operator to
outfile.
- print(PrintStream, boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Print information of the interface and values of this operator to
outfile.
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Print information if this opNode to standard output.
- print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Print information of this port onto System.out
- print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
Print this descriptor to outfile
- print(PrintStream, ALDOperator) - Method in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
Print this descriptor to outfile.
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort
-
Print information to standard out
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Print this descriptor to standard out.
- print(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Print this descriptor to outfile.
- print() - Method in class de.unihalle.informatik.Alida.operator.ALDPort
-
Print some information on System.out
- print(String) - Method in class de.unihalle.informatik.Alida.operator.ALDPort
-
Print some information on System.out
- print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Print information of this edge to standard out.
- print() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Print information of this node to standard out.
- PrintDataIOProvider - Class in de.unihalle.informatik.Alida.tools
-
A helper class to adminstrate the ALDIA dataIO system.
- PrintDataIOProvider(String[]) - Constructor for class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
-
Construct a PrintDataIOProvider using args
- printEdge(EdgeType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
Print an Edge to standard out using an indentation string
- printGraph(GraphType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
Print a graph to standard out using an indentation string
- printGraphml(GraphmlType) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
Print a graphml element to standard out
- printInstanceStatistics() - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
- printInstanceStatistics(PrintStream) - Static method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
- printInterface() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Print information of the interface of this operator to System.out.
- printInterface(PrintStream) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Print information of the interface of this operator to
outfile.
- printMap(HashMap<String, Collection<String>>) - Static method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager
-
- printNode(NodeType, String) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
Print a Node to standard out using an indentation string
- PrintOperatorInterface - Class in de.unihalle.informatik.Alida.tools
-
Prints the interface of an operator (inputs/outputs/parameters) to console.
- PrintOperatorInterface() - Constructor for class de.unihalle.informatik.Alida.tools.PrintOperatorInterface
-
- processEvents - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Flag to indicate if the is an abortion currently going on.
- processWorkflowEventQueue() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Processes all events that were recently added to the queue.
- processWorkflowEventQueue() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Processes all events that were recently added to the queue.
- providedClasses() - Method in interface de.unihalle.informatik.Alida.batch.provider.input.ALDBatchInputIterator
-
Interface method to announce all classes handled by this provider.
- providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
-
Interface method to announce class for which IO is provided for
field is ignored.
- providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
-
Interface method to announce class for which IO is provided for
field is ignored.
- providedClasses() - Method in interface de.unihalle.informatik.Alida.batch.provider.output.ALDBatchOutputSummarizer
-
Interface method to announce all classes handled by this provider.
- providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeArray1DSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.batch.provider.output.swing.ALDSummarizerNativeDataSwing
-
Interface method to announce class for which IO is provided for
field is ignored.
- providedClasses() - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter
-
Announce all classes pairs which the converter can handle.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
-
- providedClasses() - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIO
-
Interface method to announce all classes handled by this provider.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDCollectionDataIOCmdline
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDEnumDataIOCmdline
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDNativeDataIOCmdline
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDParametrizedClassDataIOCmdline
-
Interface method to announce class for which IO is provided for
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
-
Interface method to announce class for which IO is provided for.
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
-
- providedClasses() - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDParametrizedClassDataIOXmlbeans
-
Interface method to announce class for which IO is provided for
- providedClasses() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
-
Interface method to announce class for which IO is provided for
- providerAvailable(Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManager
-
Check if a provider has registered for the given class.
- providerAvailable(Class<?>) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManager
-
Check if a provider has registered for the given class.
- providesMethodName - Static variable in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter
-
Name of the method which returns all source classes supported.
- put(Object, Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Maps the specified key to the specified
value in this table.
- radioItemAdvanced - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Radio button for selecting advanced configuration mode.
- radioItemStandard - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Radio button for selecting standard configuration mode.
- readArray1D(Class<?>, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
-
Parses a string into a 1D-array.
- readArray2D(Class<?>, String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
-
Parses a string into a 2D-array.
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
-
Reads data of given class from a specified source.
- readData(Field, Class<?>, ALDSwingComponent) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing
-
Interface method for getting parameter values via a GUI element.
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
-
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
-
- readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
-
Reads data of given class from a specified source.
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
-
Reads data of given class from a specified source.
- readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
-
Reads data of given class from a specified source.
- readData(Field, Class<?>, String) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOCmdline
-
Interface for reading data from the given source.
- readData(Field, Class<?>, ALDSwingComponent) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing
-
Interface method for getting parameter values via a GUI element.
- readData(Field, Class<?>, ALDXMLObjectType) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOXmlbeans
-
Interface for reading data from the given source.
- readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDFileDirectoryDataIOCmdline
-
- readData(Field, Class<?>, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.cmdline.ALDStandardizedDataIOCmdline
-
Read an object using valueString.
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
-
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
-
- readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
-
Returns the contents of the text field.
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
-
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
-
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
-
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
-
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
-
- readData(Field, Class<?>, ALDSwingComponent) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
-
- readData(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Extracts current parametrized class configuration.
- readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDCollectionDataIOXmlbeans
-
Returns a collection instantiated from valueString.
- readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDEnumDataIOXmlbeans
-
- readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDFileDirectoryDataIOXmlbeans
-
- readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDNativeDataIOXmlbeans
-
Method to parse native data from a string.
- readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDParametrizedClassDataIOXmlbeans
-
Xmlbeans provider for parametrized classes and ALDOperators.
- readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
-
Returns an object instantiated from xmlObject.
- readData(Field, Class<?>, ALDXMLObjectType) - Method in class de.unihalle.informatik.Alida.dataio.provider.xmlbeans.ALDStandardizedDataIOXmlbeans
-
Read an object using valueString.
- readData(Field, Class<?>, ALDXMLObjectType, Object) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowDataIOXmlbeans
-
- readHistory(Object, String) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Reads and set the history graph of the given object from file.
- readHistory(Object, String) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
-
Read and set the processing history from file.
- readParameter(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Get value of given parameter from the GUI element.
- readResolve() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Init function for deserialized objects.
- readResolve() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Init function for deserialized objects.
- readXml(String, Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
-
Read Object from a file using xmlbeans providers
- readXml(File, Class<?>) - Static method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
-
Read Object from a file using xmlbeans providers
- recordModification(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Force a memory synchronization that will cause
all readers to see table.
- redirectSource(ALDWorkflowEdgeID, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Call redirectSource with with the argument allowDataConversion = false.
- redirectSource(ALDWorkflowEdgeID, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Redirect the source of an edge.
- redirectSource(ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Redirect the source of this edge
- redirectTarget(ALDWorkflowEdgeID, ALDWorkflowNodeID, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Calls redirectTarget with the argument allowDataConversion = false
The same restrictions as for createEdge apply.
- redirectTarget(ALDWorkflowEdgeID, ALDWorkflowNodeID, String, Boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Redirect the target of an edge.
- redirectTarget(ALDWorkflowNode, String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
Redirect the target of this node.
- redirectWorkflowEdge(mxCell, ALDWorkflowEdgeID, ALDWorkflowNodeID, ALDWorkflowNodeID, ALDGrappaNodePortInfo, ALDGrappaNodePortInfo) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Redirects the workflow edge.
- refQueue - Static variable in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Queue for managing references to deleted objects.
- register(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
-
Register the object in the hash.
- registerDescriptor(LinkedList<ALDOpParameterDescriptor>, ALDOpParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Register a descriptor.
- rehash() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Rehashes the contents of this map into a new table
with a larger capacity.
- reinitializeParameterDescriptors() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Reinitialize the field member of all parameter descriptors.
- relocateNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Relocate the node to this workflow.
- relocateNodes(Collection<ALDWorkflowNodeID>, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Relocate the nodes nodeIds and all edges of the sub graph induced by these
nodes to this workflow.
- remove(Object) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Removes the key (and its corresponding value) from the table.
- removeALDConfigurationEventListener(ALDConfigurationEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
- removeALDConfigurationEventListener(ALDConfigurationEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDConfigurationEventReporter
-
Removes a listener from this reporter.
- removeALDControlEventListener(ALDControlEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
- removeALDControlEventListener(ALDControlEventListener) - Method in interface de.unihalle.informatik.Alida.operator.events.ALDControlEventReporter
-
Removes a listener from this reporter.
- removeALDWorkflowClassEventListener(ALDWorkflowEventListener) - Static method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Remove a listener for events thrown by the class ALDWorkflow (not an instance).
- removeALDWorkflowEventListener(ALDWorkflowEventListener) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- removeALDWorkflowEventListener(ALDWorkflowEventListener) - Method in interface de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEventReporter
-
Removes a listener from this reporter.
- removeEdge(ALDWorkflowEdgeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Remove an edge from the workflow.
- removeExtension(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
-
Removes preceding path elements and extension from filename, if any.
- removeLeadingDirectories(String) - Static method in class de.unihalle.informatik.Alida.helpers.ALDFilePathManipulator
-
Remove all leading pathname components from a filename.
- removeNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Remove a node with all incoming and outgoing edges from the workflow.
- removeOperatorExecutionProgressEventListener(ALDOperatorExecutionProgressEventListener) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Removes a listener from this reporter.
- removeParameter(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Remove a parameter from this workflow.
- removeParameterChangeEventListener(ALDOpParameterChangeEventListener) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Removes a listener from this reporter.
- removeValueChangeEventListener(ALDSwingValueChangeListener) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.events.ALDSwingValueChangeReporter
-
Removes a listener from this reporter.
- removeWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Removes the currently active workflow.
- removeWorkflowEdge(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Removes the specified edge from the workflow.
- removeWorkflowNode(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Removes the specified cell from the graph.
- renameGraphIds(GraphType, int) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
Rename all GraphIds of nodes, edges, data, etc with a new graphID.
- renameNodeIds(NodeType, HashMap<String, String>) - Static method in class de.unihalle.informatik.Alida.operator.GraphmlHelper
-
Traverse the graph, find all graphIDs and actually rename.
- renameTextField - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- renameWin - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- renameWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Rename the currently active workflow.
- renameWorkflow(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- required - Variable in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
- restoreConfigWins() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Instantiates for each node in the current workflow a configuration window.
- restoreIDs() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Restore maps of Alida workflow IDs and corresponding graph cells.
- resultDataVec - Variable in class de.unihalle.informatik.Alida.batch.ALDBatchRunResultInfo
-
List of corresponding result data objects.
- resultDisplayButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Result display button.
- resultFrame - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Frame showing operator execution results.
- resumeWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- runButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Run button.
- runFromNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the given node and all descendants of the given node.
- runFromNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the given node and all descendants of the given node.
- runFromNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the given node and all descendants of the given node.
- runIt() - Method in class de.unihalle.informatik.Alida.tools.ALDOpRunner
-
This method does the complete work to scan arguments, read and write parameters
and runOp the operator.
- runIt() - Method in class de.unihalle.informatik.Alida.tools.PrintDataIOProvider
-
This method does the complete work to scan arguments, read and write parameters
and runOp the operator.
- runNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the given node and all its ancestors.
- runNode(ALDWorkflowNodeID, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the given node and all its ancestors.
- runNode(ALDWorkflowNodeID, boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the given node and all its ancestors.
- runOp() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
- runOp(boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
- runOp(ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
A legal method to invoke the operator and handles everything necessary to
protocol the processing history.
- runWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Run the currently active workflow.
- runWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Executes the complete workflow, i.e. all nodes currently present.
- runWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Executes the workflow.
- runWorkflow() - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the complete workflow.
- runWorkflow(boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the complete workflow.
- runWorkflow(boolean, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Run the complete workflow.
- runWorkflowFromNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Executes the workflow from the specified node to the end.
- runWorkflowInBatchMode() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- runWorkflowNode(ALDWorkflowNodeID) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Executes the workflow up to the specified node.
- save(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Save this workflow to file.
- save(String, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Save this workflow to file.
- save(File) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Save this workflow to file.
- save(File, boolean) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Save this workflow to file.
- saveHeaders - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Flag to indicate if headers should be saved to file.
- saveTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Saves the contents of the table to a user-specified file.
- saveWorkflow() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Saves the currently active workflow to file(s).
- saveWorkflow(File) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Saves the workflow to the given file.
- serializeToXmlFile(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Serializes the operator to an XML file.
- setActionPositionX(int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
-
- setActionPositionY(int) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab.WorkflowModifyAction
-
- setAllowAdditionalFields(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
-
- setClassname(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Set the canonical classname of the ALDData associated with this port
- setConstructionMode(int) - Static method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Set the mode of implicit construction of the processing graph.
- setConverter(ALDDataConverter) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowEdge
-
- setData(Double[]) - Method in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
-
Sets the 1D array
- setDebug(boolean) - Static method in class de.unihalle.informatik.Alida.operator.ALDProcessingDAG
-
Set the debug state
- setDefaultValue(Object) - Method in class de.unihalle.informatik.Alida.operator.ALDParameterDescriptor
-
Specify default value of parameter.
- setDelimiter(ALDTableWindow.TableModelDelimiter) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableConfigWindow
-
Set delimiter.
- setDirection(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- setDisplayOnly(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Enable or display parameter editing.
- setDoHistory(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerCmdline
-
- setDoHistory(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerXmlbeans
-
- setDoNormalize(Boolean) - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
- setDoPCA(Boolean) - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
- setEditable(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Disable or enable the elements in the window for editing.
- setElapsedTime(long) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Set value of elapsedTime.
- setEnabled(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Function to enable or disable the panel.
- setExperiment(ExperimentalData) - Method in class de.unihalle.informatik.Alida.demo.ALDClusterExperiment
-
Set value of data.
- setExperiment(ExperimentalData) - Method in class de.unihalle.informatik.Alida.demo.ALDKmeansOp
-
Set value of data.
- setExperiment(ExperimentalData) - Method in class de.unihalle.informatik.Alida.demo.ALDPCAOp
-
Set value of data.
- setExperiment(ExperimentalData) - Method in class de.unihalle.informatik.Alida.demo.FilterExperimentalDataOp
-
Set value of data.
- setExperiment(ExperimentalData) - Method in class de.unihalle.informatik.Alida.demo.NormalizeExperimentalDataOp
-
Set value of data.
- setExplanation(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNodePort
-
Set the explanation of the port copied from the argument descriptor
- setGraphmlHistory(GraphmlType) - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Set the grahphml history of this data port
- setHidden(ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Set hidden flag of this opNode.
- setHidingMode(ALDOperator.HidingMode) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Set the hiding mode of this operator during execution via runOp.
- setHistoryLink(Object, ALDPort) - Method in class de.unihalle.informatik.Alida.operator.ALDPortHashAccess
-
Set the port to which the object is currently linked in history.
- setLevel(ALDAOperator.Level) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
Set the level of the operators in this tree.
- setLocation(String) - Method in class de.unihalle.informatik.Alida.operator.ALDData
-
Set the location property, i.e. property with key location
- setMatrix(Double[][]) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Set value of matrix.
- setName(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Set the name of this operator
- setName(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- setNewOperator(ALDOperator) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Sets a new operator for the panel.
- setNode(mxCell) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- setNodeName(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
-
Set (new) name for operator.
- setNotifyRecursiveFlag(boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
Specify if events are to be passed forward to nested listeners or not.
- setNumCluster(Integer) - Method in class de.unihalle.informatik.Alida.demo.ALDKmeansOp
-
- setNumComponents(Integer) - Method in class de.unihalle.informatik.Alida.demo.ALDPCAOp
-
- setOperator(ALDWorkflowNodeID, ALDOperator) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
Set the operator associated with nodeId.
- setOperator(ALDOperator) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Sets the operator associated with this node.
- setOperatorExecutionProgressDescr(String) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
- setOperatorParameters(Field, Class<?>) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
-
- setOperatorParameters() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Retrieve parameter values from GUI and configure operator accordingly.
- setOpNameFilter(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
- setParameter(ALDParameterDescriptor, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Set value of given parameter, i.e. pass the value to GUI component.
- setParameter(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Set the value of a parameter specified by name.
- setParameter(String, Object) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflow
-
- setParameterBatchModeInput(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
- setParameterLinked(String, String, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Changes panel for a parameter to indicate that it is linked.
- setParameterLinked(String, String, String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
- setParameterNotLinked(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Changes panel for a parameter to indicate that it is not linked anymore.
- setParameterNotLinked(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
- setParametersFromXml(String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Set the parameter values as read from an Xml file.
- setParametersFromXml(String, String, String) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Set the parameter values as read from an Xml file.
- setParamExternallyConfigured(ALDParameterDescriptor, String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
- setParamNotExternallyConfigured(ALDParameterDescriptor) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
- setParent(ALDOpNode) - Method in class de.unihalle.informatik.Alida.operator.ALDOpNode
-
Set the parent opNode.
- setParentFrame(ALDOperatorControlFrame) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
- setParentWorkflow(ALDWorkflow) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
- setPortClassName(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- setPortExplanation(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- setPortLabel(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- setPortName(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodePortInfo
-
- setProperty(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDData
-
Set the property with key to new value o.
- setProperty(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDDataPort
-
Set the property with key to new value o.
- setProperty(String, Object) - Method in class de.unihalle.informatik.Alida.operator.ALDOutputPort
-
Set property with key to object o
- setProviderClass(String) - Static method in class de.unihalle.informatik.Alida.version.ALDVersionProviderFactory
-
Explicitly request a certain class from the code.
- setProviderInteractionLevel(ALDBatchInputManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
-
Set the level of provider interaction which is allowed.
- setProviderInteractionLevel(ALDBatchOutputManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
-
Set the level of provider interaction which is allowed.
- setProviderInteractionLevel(ALDDataIOManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
-
Set the level of provider interaction which is allowed.
- setProviderInteractionLevel(ALDDataIOManagerSwing.ProviderInteractionLevel) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Specify the provider interaction level.
- setRefID(Integer) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaNodeInfo
-
Set (new) reference ID.
- setReturnElapsedTime(boolean) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Set value of returnElapsedTime.
- setSaveHeaders(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Function to enable/disable saving of headers to file.
- setSelectedItem(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentComboBox
-
Selects the item associated with the given object.
- setSourceClass(Class<?>) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
-
- setState(ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Sets the state of this node
- setStatus(String) - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Changes the status message to the given string.
- setStepsize(int) - Method in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Set size of steps in step-wise operator execution.
- setStepsize(int) - Method in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Set size of steps in step-wise operator execution.
- setSummaries(Double[]) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Set value of summaries.
- setSummarizeMode(ApplyToMatrix.SummarizeMode) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Set value of summarizeMode.
- setSummarizeOp(ALDSummarizeArrayOp) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Set value of summarizeOp.
- setTargetClass(Class<?>) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDDataConverterManager.ALDSourceTargetClassPair
-
- setText(String) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
Set text of associated text field.
- setTriggerValueChangeEvents(boolean) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing
-
Set the value change event trigger flag.
- setTriggerValueChangeEvents(boolean) - Method in class de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing
-
Set the value change event trigger flag.
- setTriggerValueChangeEvents(boolean) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
-
Set the value change event trigger flag.
- setupAboutIcon() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
Method to initialize the Grappa icon in the about box.
- setupAdditionalMenus() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Adds additional menu items.
- setupAdditionalMenus() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
- setupAdditionalTabContents() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
- setupAdditionalTabContents() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
- setupBatchConfigPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
- setupMenu() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
Generates the menubar.
- setupParamConfigPanel() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Adds operator parameter configuration panel to input panel.
- setupResultTable() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow
-
Initializes the data table window.
- setupWindow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Construct the frame to configure an operator.
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in interface de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputIteratorSwing
-
Interface method for setting new parameter values in GUI.
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNativeArray1DSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.batch.provider.input.swing.ALDBatchInputNumberSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing
-
Update the value of a parameter in the GUI component.
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in interface de.unihalle.informatik.Alida.dataio.provider.ALDDataIOSwing
-
Interface method for setting new parameter values in GUI.
- setValue(Field, Object, Object) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
-
Sets the value of the member variable associated with field
in the object obj.
- setValue(String, Object, Object) - Static method in class de.unihalle.informatik.Alida.dataio.provider.helpers.ALDParametrizedClassDataIOHelper
-
Sets the field with given name of object objto value.
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDCollectionDataIOSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDEnumDataIOSwing
-
- setValue(Field, Class<?>, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing.FileDirectoryDataIOPanel
-
Returns the contents of the text field.
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDFileDirectoryDataIOSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray1DDataIOSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeArray2DDataIOSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDNativeDataIOSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing
-
- setValue(Field, Class<?>, ALDSwingComponent, Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDParametrizedClassDataIOSwing
-
- setValue(Object) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Update parameter values in GUI.
- setValue(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaLinkDataIOSwing
-
- setValue(Object) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowParameterDescriptor
-
- setVerbose(Boolean) - Method in class de.unihalle.informatik.Alida.demo.ApplyToMatrix
-
Set value of verbose.
- setVerbose(Boolean) - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Set the verbose state of this opertor.
- setVisible(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.ALDOperatorDataIOSwing.OperatorConfigWindow
-
Displays the window and inits an operator object (if not done before).
- setVisible(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParametrizedClassConfigWindow
-
Show or hide the window.
- setWorkbenchTab(ALDGrappaWorkbenchTab) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchGraph
-
Specify workbench tab associated with this graph.
- setWorkflowNodeViewMode(mxCell, Parameter.ExpertMode) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Switches the mode for displaying parameters of a node.
- setWorkflowTitle(String) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbenchTab
-
Changes the workflow title.
- SezPozAdapter - Class in de.unihalle.informatik.Alida.annotations.indexing
-
- showAboutBox() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaMenuBar
-
Show an about box window.
- showAboutBox() - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
Show an about box window.
- showGUI() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
Displays the configuration and control window.
- showLoadFileSelectDialog() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Show file dialog to load a workflow.
- showResultFrame() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
(Re-)display the result frame again, if results available.
- showSaveFileSelectDialog() - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
Show file dialog to save a workflow.
- size() - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Returns the number of key-value mappings in this map.
- split(String, char) - Static method in class de.unihalle.informatik.Alida.helpers.ALDParser
-
Split a string at each occurance of sepChar.
- sput(Object, Object, int) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Continuation of put(), called only when synch lock is
held and interference has been detected.
- sremove(Object, int) - Method in class de.unihalle.informatik.Alida.helpers.ALDConcReadWeakHashMap
-
Continuation of remove(), called only when synch lock is
held and interference has been detected.
- standardTreeModel - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorChooserTree
-
Tree of available operators for standard level.
- stateChanged(ChangeEvent) - Method in class de.unihalle.informatik.Alida.grappa.ALDGrappaWorkbench
-
- stateGreaterEqual(ALDWorkflowNode.ALDWorkflowNodeState) - Method in class de.unihalle.informatik.Alida.workflows.ALDWorkflowNode
-
Return true if the state of this node is greater equal the
compareState
- status - Variable in class de.unihalle.informatik.Alida.grappa.ALDGrappaFrame
-
Label of status bar, changes dynamically.
- status - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorConfigurationFrame
-
Label of status bar, changes dynamically.
- stepButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Button for stepping through optimization process.
- stepSize - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
Step size in step-wise execution mode.
- stepsize - Variable in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Size of one step in step-wise execution mode.
- stepsize - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Size of one step in step-wise execution mode.
- stepThroughBox - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Box for activating step-through mode.
- stepThroughStepSize - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Field for specifying number of iterations per step-through step.
- stepWiseExecution - Variable in class de.unihalle.informatik.Alida.operator.ALDOperatorControllable
-
Flag for step-wise execution.
- stepwiseExecution - Variable in class de.unihalle.informatik.Alida.operator.events.ALDConfigurationEvent
-
Flag for stepwise execution.
- stepwiseExecution - Variable in class de.unihalle.informatik.Alida.operator.events.ALDOpParameterChangeEvent
-
Flag for stepwise execution.
- stopButton - Variable in class de.unihalle.informatik.Alida.gui.ALDOperatorControlFrame
-
Stop button to stop snake optimization (after end of iteration).
- stopWorkflow() - Method in class de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy
-
- SubclassFinder - Class in de.unihalle.informatik.Alida.helpers
-
Utility-class with static methods to
find all sub-classes of a certain class (or interface) within the scope
of the current class-loader
find all sub-classes of a certain class (or interface) within the scope
of the current class-loader that can be instantiated, i.e. that are neither
interfaces nor abstract
filter a set of classes by inheritance from a super-class
obtain the class of an InstanceParameterSet that can be used to
instantiate a sub-class of InstantiableFromParameterSet.
- SubclassFinder() - Constructor for class de.unihalle.informatik.Alida.helpers.SubclassFinder
-
- summary - Variable in class de.unihalle.informatik.Alida.demo.ALDSummarizeArrayOp
-
Summarizing scalar
- supplemental - Variable in class de.unihalle.informatik.Alida.operator.ALDOpParameterDescriptor
-
- supportConversion(Class<?>, Type[], Class<?>, Type[]) - Method in interface de.unihalle.informatik.Alida.dataconverter.ALDDataConverter
-
Does the converter support this kind of conversion.
- supportConversion(Class<?>, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDNumberConverter
-
- supportConversion(Class<?>, Type[], Class<?>, Type[]) - Method in class de.unihalle.informatik.Alida.dataconverter.ALDVectorNativeArrayConverter
-
- validate() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Validates the parameters and inputs of this operator.
- validateCustom() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Operator specific validation of parameters and inputs.
- validateGeneric() - Method in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Generic validation of the in and inout parameters of this operator.
- validateOperatorParameters(boolean) - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDOperatorParameterPanel
-
Check if operator is ready to run.
- validateParameters() - Method in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDParameterPanel
-
Check if all GUI elements can deliver a proper (non-null) value.
- value - Variable in class de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDSwingComponentTextField
-
Current value of the text field.
- valueChanged(TreeSelectionEvent) - Method in class de.unihalle.informatik.Alida.gui.ALDChooseOpNameFrame
-
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.ExecutionMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.Level
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Direction
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.ExpertMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Type
-
Deprecated.
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing.ProviderInteractionLevel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing.ProviderInteractionLevel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing.ProviderInteractionLevel
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableModelDelimiter
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.ApplyToMatrix.SummarizeMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.demo.MatrixSum.SummarizeMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException.ALDBatchIOManagerExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException.ALDBatchIOProviderExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataConverterException.ALDDataIOProviderExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException.ALDDataIOManagerExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException.ALDDataIOProviderExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDOperatorException.OperatorExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException.DAGExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDProviderManagerExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDWorkflowException.WorkflowExceptionType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.WorkflowThreadStatus
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatus
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorLocation.LocationType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.ALDProcessingDAG.HistoryType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDControlEvent.ALDControlEventType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.ALDWorkflowContextType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflowNode.ALDWorkflowNodeState
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent.ALDWorkflowClassEventType
-
Returns the enum constant of this type with the specified name.
- valueOf(String) - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent.ALDWorkflowEventType
-
Returns the enum constant of this type with the specified name.
- values() - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.ExecutionMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.annotations.ALDAOperator.Level
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Direction
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.ExpertMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.annotations.Parameter.Type
-
Deprecated.
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchInputManagerSwing.ProviderInteractionLevel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.batch.ALDBatchOutputManagerSwing.ProviderInteractionLevel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.dataio.ALDDataIOManagerSwing.ProviderInteractionLevel
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.dataio.provider.swing.components.ALDTableWindow.TableModelDelimiter
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.demo.ApplyToMatrix.SummarizeMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.demo.MatrixSum.SummarizeMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOManagerException.ALDBatchIOManagerExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDBatchIOProviderException.ALDBatchIOProviderExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataConverterException.ALDDataIOProviderExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOManagerException.ALDDataIOManagerExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDDataIOProviderException.ALDDataIOProviderExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDOperatorException.OperatorExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProcessingDAGException.DAGExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDProviderManagerException.ALDProviderManagerExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.exceptions.ALDWorkflowException.WorkflowExceptionType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.gui.ALDOperatorGUIExecutionProxy.WorkflowThreadStatus
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperator.HidingMode
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorControllable.OperatorControlStatus
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDOperatorLocation.LocationType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.operator.ALDProcessingDAG.HistoryType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.operator.events.ALDControlEvent.ALDControlEventType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflow.ALDWorkflowContextType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.workflows.ALDWorkflowNode.ALDWorkflowNodeState
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowClassEvent.ALDWorkflowClassEventType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- values() - Static method in enum de.unihalle.informatik.Alida.workflows.events.ALDWorkflowEvent.ALDWorkflowEventType
-
Returns an array containing the constants of this enum type, in
the order they are declared.
- verbose - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Verbose flag to be inherited by all operators.
- versionProvider - Variable in class de.unihalle.informatik.Alida.operator.ALDOperator
-
Instance of a class providing version information.