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java.lang.Objectde.unihalle.informatik.Alida.operator.ALDOperator
de.unihalle.informatik.Alida.demo.ALDClusterExperiment
@ALDAOperator(genericExecutionMode=ALL,
level=APPLICATION)
public class ALDClusterExperimentDemo operator to cluster experimental data.
First, optionally the data are normalized. Second, again optionally, the data are subjected to a PCA. Finally clustered via k-means.
| Nested Class Summary |
|---|
| Nested classes/interfaces inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
|---|
ALDOperator.HidingMode |
| Field Summary |
|---|
| Fields inherited from class de.unihalle.informatik.Alida.operator.ALDOperator |
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completeDAG, name, portHashAccess, verbose, versionProvider |
| Constructor Summary | |
|---|---|
ALDClusterExperiment()
Default constructor. |
|
ALDClusterExperiment(ExperimentalData _experiment)
Constructor. |
|
| Method Summary | |
|---|---|
java.util.List<java.util.Set<java.lang.Integer>> |
getClusters()
Get value of result. |
java.lang.Boolean |
getDoNormalize()
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java.lang.Boolean |
getDoPCA()
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ExperimentalData |
getExperiment()
Get value of experiment. |
ExperimentalData |
getNormalizedExperiment()
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protected void |
operate()
This method does the actual work and needs to be implemented by every subclass. |
void |
setDoNormalize(java.lang.Boolean doNormalize)
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void |
setDoPCA(java.lang.Boolean doPCA)
|
void |
setExperiment(ExperimentalData value)
Set value of data. |
| Methods inherited from class java.lang.Object |
|---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
| Constructor Detail |
|---|
public ALDClusterExperiment()
throws ALDOperatorException
ALDOperatorException
public ALDClusterExperiment(ExperimentalData _experiment)
throws ALDOperatorException
experiment - Experimental data
ALDOperatorException| Method Detail |
|---|
protected void operate()
throws ALDOperatorException,
ALDProcessingDAGException
ALDOperator
operate in class ALDOperatorALDOperatorException
ALDProcessingDAGExceptionpublic java.util.List<java.util.Set<java.lang.Integer>> getClusters()
public ExperimentalData getExperiment()
public void setExperiment(ExperimentalData value)
value - New value of datapublic java.lang.Boolean getDoNormalize()
public void setDoNormalize(java.lang.Boolean doNormalize)
doNormalize - the doNormalize to setpublic java.lang.Boolean getDoPCA()
public void setDoPCA(java.lang.Boolean doPCA)
doPCA - the doPCA to setpublic ExperimentalData getNormalizedExperiment()
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